Search Results for "pdb"
Sort By:
Showing 73 open source projects for "pdb"
View related business solutions-
Paessler: Easy to Use With Enterprise Power. Free TrialYou shouldn't have to choose between a monitoring tool that's easy to use and one that's powerful enough for a complex environment. PRTG's low-code interface lets any admin build dashboards, set alerts and monitor devices without scripting, while custom sensors and full API access are there when your team needs deeper control. One platform, no compromise. Download a free 30-day trial now.
-
Earn up to 16% annual interest with Nexo.Generate interest, borrow against your crypto, and trade a range of cryptocurrencies — all in one platform. Geographic restrictions, eligibility, and terms apply.
-
1
The RAD Debugger Project
A native, user-mode, multi-process, graphical debugger
RAD Debugger is a native graphical debugger developed for high-performance debugging of large C and C++ applications. Its primary supported target is local Windows x64 software using PDB debug information. The debugger is user-mode and can work with multiple processes during a debugging session. PDB information is converted into the project’s custom RAD Debug Info format for faster and more controlled processing. The repository also contains radbin, utilities for inspecting and converting binary information. A related RAD Linker targets large x64 PE/COFF programs and can produce either standard PDB or native RDI data. ... -
2
ChatDBG
ChatDBG - AI-assisted debugging. Uses AI to answer 'why'
ChatDBG is an AI-assisted debugging tool that integrates large language models into standard debuggers like pdb, lldb, and gdb. It allows developers to engage in a dialog with the debugger, asking open-ended questions about their program's behavior, and provides error diagnoses and suggested fixes. -
3
ILSpy
.NET Decompiler with support for PDB generation, ReadyToRun, Metadata
ILSpy is the open-source .NET assembly browser and decompiler. Visual Studio 2022 ships with decompilation support for F12 enabled by default (using our engine v7.1). In Visual Studio 2019, you have to manually enable F12 support. Go to Tools / Options / Text Editor / C# / Advanced and check Enable navigation to decompiled source. C# for Visual Studio Code ships with decompilation support as well. To enable, activate the setting "Enable Decompilation Support. ILSpy is distributed under the... -
4
Avogadro 2
Avogadro libraries provide 3D rendering, visualization, and analysis
AvogadroLibs is the core C++ library behind Avogadro 2, an open-source molecular editor and visualization platform used in chemistry, materials science, and education. It provides the essential tools for constructing, analyzing, and visualizing molecular structures in 2D and 3D. Designed for extensibility, AvogadroLibs supports plugins for quantum chemistry computations, molecular mechanics, and surface rendering. It interfaces with multiple chemistry formats and data sources, making it a... -
Demo Series - Small Business Backup By VeeamWatch this on-demand demo series and learn how to protect your Microsoft 365 data with clear, simple, actionable steps that are easy to implement for businesses of all sizes.
-
5
GraphQL for .NET
This is an implementation of Facebook's GraphQL in .NET
...A GraphQL service is created by defining types and fields on those types, then providing functions for each field on each type. All packages generated from this repository come with embedded pdb and support Source Link. If you are having difficulty understanding how the code works or have encountered an error, then it is just enough to enable Source Link in your IDE settings. Then you can debug GraphQL.NET source code as if it were part of your project. The Schema first approach relies upon the GraphQL schema language, coding conventions, and tries to provide a minimal amount of syntax. ... -
6
KOReader
An ebook reader application supporting PDF, DjVu, EPUB, FB2, etc.
KOReader is a document viewer for E Ink devices. Supported fileformats include EPUB, PDF, DjVu, XPS, CBT, CBZ, FB2, PDB, TXT, HTML, RTF, CHM, DOC, MOBI and ZIP files. It’s available for Kindle, Kobo, PocketBook, Android and desktop Linux. Runs on embedded devices (Cervantes, Kindle, Kobo, PocketBook, reMarkable), Android and Linux computers. Developers can run a KOReader emulator in Linux and MacOS. Multi-lingual user interface with a highly customizable reader view and many typesetting options. ... -
7
iCn3D
Web-based protein structure viewer and analysis tool
...The complete package of iCn3D including Three.js and jQuery is in the directory "dist" after you get the source code with the "Code" button. View a 3D structure in iCn3D, input a PDB ID, and click "Load". You can also click the "File" menu to "Open File" or input other IDs. You can open a browser in your Virtual Reality (VR) headset and view a 3D structure in iCn3D. Then click the button "Enter VR" at the bottom center of your browser to enter the VR view. You can select residues with the trigger button. -
8
DBConvert is a cross converter for HanDBase-, List-, JFile-, MobileDB-, PilotDB-, MariaDB-, MySQL-, PostgreSQL-, SQLite-, MS-Access-, SQL Server-, Firebird- , DBase- and Foxpro- databases, as well as MS-Excel and Calc spreadsheets, CSV- , JSON-, vCard-, hCard-, jCard-, xCard-, YAML- and XML files. Source files: https://github.com/TvBreukelen/fnpdbservices
-
9
We developed IBEIP, an intelligent and accurate tool for identifying B cell dominant epitope regions based on Ag-nAb complex crystal structures from PDB database. During epitope mapping, IBEIP analyzes four molecular interactions (van der Waals forces, buried surface area, hydrogen bonds, and electrostatic interactions) between antigen and antibody complexes to ensure accuracy. IBEIP uses a hierarchical iterative merging model to merge highly overlapping epitopes and identify the hot nAb binding region as the B cell dominant epitope region. ...
-
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
-
10
A simple book reader for android. This reader is develop for Chinese book reading. It can display book in traditional style, right to left and top to bottom.It can open txt, html, epub, pdb(Haodoo), srb(book build for simplereader with notes inside)
-
11
Jmol
An interactive viewer for three-dimensional chemical structures.
...Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. ... -
12
Hydrogen Bond Analysis Tool (HBAT)
HBAT 2 is migrated from PERL to Python.
HBAT(Hydrogen Bond Analysis Tool) is a tool to automate the analysis of hydrogen bonds present in a PDB Structure file. HBAT 2 is migrated from PERL to Python. Latest Documentation: https://hbat.abhishek-tiwari.com/ Web Server Version: http://hbat-web.abhishek-tiwari.com Latest Github Release: http://github.com/abhishektiwari/hbat Citation: Tiwari, A., & Panigrahi, S. K. (2007). HBAT: A Complete Package for Analysing Strong and Weak Hydrogen Bonds in Macromolecular Crystal Structures. ... -
13
MUI Extended
A bunch of unofficial icons based on Google's Material Design Icons.
A bunch of unofficial icons based on Google's Material Design Icons. This is not affiliated with, or made by Google. -
14
Cecil
Cecil is a library to inspect, modify and create .NET programs
...If you're using Cecil, or depend on a framework, project, or product using it, please consider sponsoring Cecil. Cecil 0.10 beta 5 addresses a long standing issue: previously, a rewrite of native pdb files would lose some debugging information, including the list of namespaces that were used in methods (and thus breaking the expression evaluation) or the scopes in generators (for iterators or async methods). -
15
RedtDec
RetDec is a retargetable machine-code decompiler based on LLVM
The decompiler is not limited to any particular target architecture, operating system, or executable file format. ELF, PE, Mach-O, COFF, AR (archive), Intel HEX, and raw machine code supported. 32-bit: Intel x86, ARM, MIPS, PIC32, and PowerPC 64-bit: x86-64 supported. Demangling of symbols from C++ binaries (GCC, MSVC, Borland). Reconstruction of functions, types, and high-level constructs. Output in two high-level languages: C and a Python-like language. Generation of call graphs,... -
16
AWS GameKit Plugin for Unreal
The AWS GameKit Plugin for Unreal
...Game projects created in Unreal versions later than 4.27 are not backward compatible. AWS GameKit supports Unreal Engine version 4.27. Create the Visual Studio Solution for your game. Build GameKit C++ and copy over the DLL/PDB files. Make sure to checkout the matching version from the .gkcpp_version file in this repository. -
17
MOF-VR is a virtual reality program developed for Microsoft Windows and HTC Vive that allows for hypothetical metal-organic frameworks (MOFs) to be constructed and tested in molecular dynamics simulations of guest molecules.
-
18
Timer for speech and debate competitions. Keeps track of speech order, time limits, and prep time for various debate formats (Policy, LD, Parliamentary, Public Forum, etc.) and individual events. Gives verbal and visual time signals.
-
19
Cool Reader
A cross-platform XML/CSS based eBook reader
CoolReader is fast and small cross-platform XML/CSS based eBook reader for desktops and handheld devices. Supported formats: FB2, TXT, RTF, DOC, TCR, HTML, EPUB, CHM, PDB, MOBI. Platforms: Win32, Linux, Android. Ported on some eInk based devices. -
20
JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
21
chops
Convex Hull Of Protein Surface
This program will calculate all k-th convex hulls of protein surface when input a protein pdb file (pdb format), it is supplied in source code form along with the required data files and run under the windows/linux. -
22
vcproj2cmake
Visual Studio .vc[x]proj to CMakeLists.txt (make, Ninja ...) enabler
Elaborate Visual Studio .vcxproj / .vcproj projects to CMakeLists.txt converter, enabling Makefile or Ninja or IDE builds, i.e. full multi-platform CMake functionality (Linux, Mac, Windows...). Live Update capability: supports side-by-side tracking of evolving original proj files, within build tree!! Script hooks for static CMake defs, powerful definition-to-variable mapping. Access to project data content is via git repository _only_ (it's a developer infrastructure project, thus... -
23
LinXTL is a text editor and a crystallographic toolbox for structural solution and refinement. It includes support for commonly used X-ray programs, makes it easer to generate publication materials and appendices for PhD thesis.
-
24
chemfiles
Modern library for chemistry file reading and writing
Chemfiles is a modern and high-quality library for reading and writing trajectory files created by computational chemistry simulations program. These trajectories contains atomic positions, velocities, names, topology and sometimes more. Running simulations produce enormous amounts of data, which has to be post-processed to extract physical information about the simulated system. Chemfiles provides an interface to access this information which is - unified: the same code will work with... -
25
cosurim
Computation of composition of core, rim and surface of PDB files
Authors: Parth Sarthi Sen Gupta, Rifat Nawaz Ul Islam and Amal K Bandyopadhyay Department of Biotechnology, The University of Burdwan, Golapbag, Burdwan, 713104, West Bengal, India. A fully automated procedure that can analyze a large database of crystal structures with variable number of chains in them , for the results of absolute and normalized compositions of the core, surface and rim of any number of x-ray structures with any number of chains in them.
