Search Results for "pbs-drmaa"
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Showing 26 open source projects for "pbs-drmaa"
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Out-of-the-box scripts. Around-the-clock monitoring. Unmatched automation capabilities. Start doing more with less and exceed service delivery expectations.
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BrightGauge, a ConnectWise solution, was started in 2011 to fill a missing need in the small-to-medium IT Services industry: a better way to manage data and provide the value of work to clients. BrightGauge Software allows you to display all of your important business metrics in one place through the use of gauges, dashboards, and client reports. Used by more than 1,800 companies worldwide, BrightGauge integrates with popular business solutions on the market, like ConnectWise, Continuum, Webroot, QuickBooks, Datto, IT Glue, Zendesk, Harvest, Smileback, and so many more. Dig deeper into your data by adding, subtracting, multiplying, and dividing one metric against another. BrightGauge automatically computes these formulas for you. Want to show your prospects how quick you are to respond to tickets? Show off your data with embeddable gauges on public sites.
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ASGARD
Metabolic reconstruction from DNA or protein sequences.
ASGARD is software for metabolic pathway reconstruction, but it can also generate other types of biological sequence annotation (EC and GO numbers, BLAST reports). This program is intended to be run in UNIX-like systems, and supports SGE or PBS. -
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package-build-service
Tools for building packages in clean chroot environment
Package Build Service (pbs) - Tools for building packages in clean chroot environment: aum++: Tool for building packages in clean chroot environment mass_rebuild: Tool for automatic rebuilding package(s) repo-hdlistgen: Tool for work with own repo genchroot-tarball: Tool for generation chroot archive mass_rebuild_test: Tool for testing installation packages after mass_rebuild pbs: Service for building packages in clean chroot environment (temporary... -
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FBSAT
An efficient analysis pipeline for family-based sequencing
Through our tool a user can perform the whole analysis parallelized on UNIX HPC systems controlled by SGE or PBS automatically. Non-bioinformatics researchers can easily and quickly identify variants that are potentially causing diseases while minimizing false positives and artifacts. -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently... -
Define and Deliver Comprehensive Cybersecurity Services. Security threats continue to grow, and your clients are most likely at risk. Small- to medium-sized businesses (SMBs) are targeted by 64% of all cyberattacks, and 62% of them admit lacking in-house expertise to deal with security issues. Now technology solution providers (TSPs) are a prime target. Enter ConnectWise Cybersecurity Management (formerly ConnectWise Fortify) — the advanced cybersecurity solution you need to deliver the managed detection and response protection your clients require. Whether you’re talking to prospects or clients, we provide you with the right insights and data to support your cybersecurity conversation. From client-facing reports to technical guidance, we reduce the noise by guiding you through what’s really needed to demonstrate the value of enhanced strategy.
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Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
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Ganglia Job Monarch
Batch system monitoring and archiving
Job Monarch is an addon to the Ganglia Monitoring System that provides batch job monitoring and archiving plus a graphical overview of clusters and assorted batch systems. Fully supported batch system: Torque, PBS and SLURM. Experimental: LSF, SGE -
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PBS Cluster Viz is a project to display information useful to admins and users about a computing cluster managed by a PBS-compatible resource manager. Information includes load and job distribution. Interactive as well as static output is available.
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Mpaxs
Transparent Local and Remote Parallelization for Java
Mpaxs provides a simple abstraction for executing Callables and Runnables either locally within the same Virtual Machine, on the same host via RMI, or on remote machines, also via RMI. It supports launching of new compute hosts via an extensible API, currently featuring local compute host launching and grid compute host launching using the DRMAA API. -
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A simple lightweight system for genomic annotation written in Java. SHAP uses the Spring application framework, Hibernate for persistence and full-text searching of results and DRMAA for Grid computing.
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Chat with your business data with Looker. More than just a modern business intelligence platform, you can turn to Looker for self-service or governed BI, build your own custom applications with trusted metrics, or even bring Looker modeling to your existing BI environment.
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RNA CoMPASS
RNA CoMPASS is a web-based GUI distributed computational pipeline.
RNA CoMPASS, a web-based GUI distributed computational pipeline, provides all-in-one functionality including human transcriptome quantification and the typical endogenous RNA-Sequencing analysis along with the investigation of exogenous sequences. RNA CoMPASS is deployable on either a local cluster or a grid environment managed by PBS submission. -
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Dress Up RNA seq
End-to-end automated pipeline of RNA seq packages for an HPC system
... are submitted to the cluster depending on attributes set up in the configuration file. Program options can be modified in the main script "DressUp", and PBS options can be modified from the HeaderFiles directory. -
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DCI Bridge is a web application (sevice) that provides standard access to the distributed computing infrastructures (DCIs) like grids, desktop grids, clusters, clouds and service based computational resources by implementing the specification of the OGSA Basic Execution Service 1.0. The DCI Bridge web application creates a transparent layer between the users (workflow systems) and the DCI systems. The user can submit jobs to the various DCI systems using the OGSA Basic Execution Service...
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A set of Java-tools to get Taverna to "play-nice" with a cluster that runs PBS. Please see the homepage link for more details.
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Cross platform GUI managing bookmarks and shortcuts in a portable way. Support import/export, search, encryption, hierarchical tags, USB key installation, various environments integration, OS-dependent shortcuts, plugins extensibility.
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PBS Job Seer is a program which analyses the state of a PBS/Maui batch system and automatically generates a batch script for MPI jobs which would then be able to start immediately.
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Rapid development of portal-based user interfaces for submitting compute jobs to remote compute resources. It supports the mainstream compute engine vendors Sun Grid Engine, PBS and Condor. Get a job-submission portal up and running in a few hours.
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A web-based monitor for PBS-based clusters (e.g. OpenPBS and Torque). It provides an overview of node usage, running jobs, and active users. It is built on the pbs-python libraries.
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FedStage DRMAA for Torque library is an implementation of Open Grid Forum's DRMAA 1.0 (Distributed Resource Management Application API) specification for the submission and control of jobs to Torque.
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XgridDRMAA is an Xgrid implementation of the Distributed Resource Management Application API (DRMAA), a simple framework for the submission and control of jobs to grid computing ("distributed resouce management") systems.
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The project offers extensions for source code available in the Condor system (www.cs.wisc.edu/condor). The modifications are backported to the Condor distribution. Amongst others, we are offering an improved implementation of the Condor DRMAA C library.
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Job Accounting and User and Project managment for Clustered Computing using Perl, Apache, and MySQL. Designed to be extensible, it processes logs from currently PBS, OpenPBS and Maui2. It also contains a web frontend for User and Project Managment
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This is a collection of Perl scripts that parses the accounting directory of Torque PBS and prints out some useful statistics.
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The Java Batch System (JBS) is a batch queueing system in the tradition of NQS and PBS for internal (Java-based) and system batch jobs. Stand-alone operation and integration with existing batch queueing systems, initially OpenPBS, is supported.
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SSS/XML implements the SSSRMAP protocol developed by SCIDAC. It includes an API and servers that use the SSSRMAP protocol to communicate with the QBank allocation manager and the Portable Batch System (PBS).
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I developed this for PBS as a quick way to display local station events. This app uses the iCal standard, but in an XML format (xCal) with a MySQL and perl backend. You can import xCal events from an .xsc file to MySQL. Uses XML/XSL/XSLT.