Search Results for "netds"

PANET, a Cytoscape plugin is developed to efficiently analyze the robustness-related dynamics and feed-forward/feedback loop structures of biological networks. This is an advanced plugin of NetDS (http://netds.sourceforge.net/). We employed OpenCL library to make the time-consuming parts of NetDS are processed in parallel. Finally, in comparison to the original NetDS, PANET performed large-scale robustness calculation and feed-forward/feedback loop examination faster by several hundred times for a human signaling network with 1609 nodes and 5063 links.

NetDSpar, a Cytoscape plugin is developed to efficiently analyze the robustness-related dynamics and feed-forward/feedback loop structures of biological networks. This is an improved plugin of NetDS (http://netds.sourceforge.net/). We employed OpenCL library to make the time-consuming parts of NetDS are processed in parallel. Finally, in comparison to the original NetDS, NetDSpar performed large-scale robustness calculation and feed-forward/feedback loop examination faster by several hundred times for a human signaling network with 1609 nodes and 5063 links.

NetDS is provided to easily observe the dynamic behaviors of signaling, regulatory as well as random Boolean networks by two types of mutaion. Otherwise, some structural properties can also be found to understand more about those dynamic behaviors.