Search Results for "genetics"
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Showing 37 open source projects for "genetics"
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SKUDONET ADC, operates at the application layer, efficiently distributing network load and application load across multiple servers. This not only enhances the performance of your application but also ensures that your web servers can handle more traffic seamlessly.
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Automate tracking and maintenance of company assets and infrastructure through one app that works on any device and even offline.
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Amazon Genomics CLI
Tool to simplify the processes of deploying the AWS infrastructure
... infrastructure, providing you with an easy-to-use command-line interface to quickly setup and run genomics workflows on Amazon Web Services (AWS) specified by languages like WDL. By removing the heavy lifting from setting up and running genomics workflows in the cloud, software developers and researchers can automatically provision, configure and scale cloud resources to enable faster and more cost-effective population-level genetics studies, drug discovery cycles, and more. -
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123VCF
An Intuitive and Efficient Tool for VCF file filtration
... Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran -
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est-sfs
Estimate the unfolded site frequency spectrum and ancestral states
.... For details of the method, see Keightley and Jackson, Genetics 209: 897-906 (2018). -
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coatli
Second and third moments of the "Site frequency spectrum".
In population genetics, the "site frequency spectrum" is an important summary statistic of the variation in aligned DNA sequences. This package contains implemented algorithms for the analytical calculation of the expected second and third moments of this spectrum (under the standard neutral Wright-Fisher model). Furthermore there are utilities to estimate these quantities from coalescent simulation (using output of the program 'ms', written by R.R. Hudson). As an add-on some small utilities... -
TeleRay transfers patient studies faster and more securely than any other method.
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Jack LIRE (Linked Record)
Quantum universal object system with referencing and genetics
Jack LIRE (Linked Record) is a quantum database-backed life-long text record diary with referencing (linking) between records, and a data library for life-long keeping of files such as documents, photographs, music and more. The diary records are fully searchable. Files can be mentioned in diary records to preserve memories, document knowledge and ideas, and more. Massive numbers of diary records and files can be permanently kept. A database located on one computer can be accessed from... -
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SVPhylA
SVPhylA: Sequence Vectorization for Phylogenetic Analyses
...-Kernel (non-lineal). In addition, genetic distances derived can be either combined between them or with the alignment-free distances. So far, SVPhylA contain a module to compare tree topologies by using different distance measures as a validation procedure. The statistical validation (bootstrap and jacknife) of the alignment-free trees is being developed SVPhylA is mostly designed to interact to MEGA (MOLECULAR EVOLUTIONARY GENETICS ANALYSIS). -
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LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have.
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Application to estimate haplotypes and other genetics data, based on maximum likehood approach. It can handle present-absent as well as multiallelic loci.
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Unlock the highest levels of straight-through processing (STP) and streamline your AP workflows with Neil, an AI Accounts Payable Executive, your one-stop solution to all your AP woes! From monitoring emails across channels to processing invoices to running n-way matches to the final entry into the ERP and everything in between, Neil handles it all—single-handedly, without human intervention.
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Forward Simulation
A Wright-Fisher forward population genetics simulation.
The forward simulation code is a tool to model evolution of a population under the Wright-Fisher model. The code incorporates population expansion, bottleneck, speciation and migration. Several selection and fitness mechanisms are available: selective sweeps, foreground selection in one region with a distinct background selection in neighboring regions, epistasis, and truncation selection. The code is implemented in the C++ programming language. -
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SMARTPOP
Fast forward-in-time simulation software for population genetics
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SysGenSIM is a bioinformatics toolbox to create artificial gene expression datasets by simulating Systems Genetics experiments.
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CCH
A genetics tool that identifies genomic regions of shared ancestry
Combinatorial Conflicting Homozygosity (CCH) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry. The associated publication regarding CCH may be accessed here: http://www.biomedcentral.com/1471-2164/16/163 If... -
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MERAP
Medical Resequencing Analysis Pipeline
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coalescent
Software tool for Research in Computational Population Genetics
Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT -
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VariantMaster
Extract causative variants for monogenic and sporadic genetic diseases
There is a fast growing interest in clinical genetics to the utilization of High Throughput Sequencing data for accurate diagnosis of monogenic diseases. To improve the identification of the variants from HTS, we developed VariantMaster, an original program that accurately and efficiently extracts causative variants in familial and sporadic genetic diseases. The algorithm takes into account predicted variants (SNPs and indels) in affected individuals or tumor samples and utilizes the row (BAM... -
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niGA
Heterogenous Multiprocessor Scheduling Using Genetic Algorithms
Implementation of task scheduling using Genetics algorithm for heterogeneous parallel programming -
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GenSim
A free chicken genetics simulator
Gensim is a free Mendelian genetics simulator based on the expression of genes in chickens. -
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Bioinformatics Learning Tutorial
An interactive undergraduate biology tutorial
Interactive tutorials for undergrad genetics students illustrating DNA replication, transcription, and translation. Original color graphics and animations. * Source requires Qt libraries (http://qt-project.org/downloads) * Windows version @: http://www.cs.transy.edu/nsmith/BLT_Windows.zip -
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GenLab abbreviation of Genetics Laboratory .It is a user-friendly bioinformatics tool to support your bioinformatics lab work. GenLab creates a software user-friendly environment, which makes users to make a large number of protein, DNA, and RNA sequence analysis and excellent graphical viewing. It also provides powerful environment for simulations of Protein 3D molecular models. GenLab typically provides: •User-friendly graphical tools used for finding and working with relevant regions...
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dfe-alpha
Population genetics inference
Estimate distribution of fitness effects of new mutations. -
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The aim of project is to create simplified society simulator including virtual peaople relationships, genetics, needs, behavior etc.
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GeneNetwork is an open source bioinformatics software resource for systems genetics used to study gene networks that link sequence variants to differences in gene and protein expression and to differences in traits such as health and disease risk.
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Expediting cancer genetic and neurogenetic discovery through Bayesian Network Analysis of microarray data. Designed for genetics researchers, this takes in raw data (and a very small about of user input) and outputs reports usable by biologists.
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Assimilator is a molecular genetics tool to inform selection of associated genetic variants for functional studies
