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PyCrust is an interactive Python shell written in Python using wxPython. PyCrust is now part of wxPython (www.wxpython.org), so packaged files are no longer available here, and the latest development version has moved to the wxWindows CVS repository.
Simulator for large neuronal networks using leaky INF as its basic element. Simple few line scripts will enable rapid creation of large networks with different connectivities. Aimed at researchers interested in quickly testing large networks of neurons.
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FreePM is an opensource physicians practice management / electronic medical record application.
The company providing support for FreePM nolonger exists. You may consider TORCH http://sourceforge.net/projects/op-torch/
or one of the other FOSS EMR's.
A Genetic Algorithm Training System in Python.
Gatspy provides the framework, the user provides the error
(fitness) function. Gatspy will evolve a solution that
attempts to minimize the error.
Pfem is a python-based finite element program aimed at
solving solid mechanics and heat transfer problems with
flexibility, efficiency and sound object-oriented design.
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PySDB is simple to use field data manager for structural geologists written in Python. Data are traditionally organized by sites and rock units, classified by structural types and could be freely tagged by user-defined labels.
PyAero is a toolkit developped at andheo for CFD software :
post-processing, curve generation, …
Currently PyAero focuses on ONERA's code "Cedre".
PyAero is powered by Qt, Python, PySide, enthought and pyLot.
Ducking is a software who is providing simulation of probable docking between two proteins using rigid body monte carlo method. It is written in python and uses the libraries wxPython, VTK, SciPy and BioPython.
SimForge is a web-based Agent Based Model of an Open Source Ecosystem implemented in Python with Django. Developers act on randomly drawn preferences to create, collaborate, and use software.
Python package OCFit includes 4 classes for analysis and fitting of O-C diagrams of Eclipsing binaries
In a case of using this package for scientific purposes, please, cite our paper Gajdoš &
Parimucha (2018) where you can also find more detail description about fitting functions
and used models.
For install it, download/clone this repository or download suitable binary file from releases.
Not working yet! The first release comming soon...
Requirements
numpy
...
aVolve is an evolutionary/genetic algorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Genetic algorithm, but does include a primitive genetic algorithm written in Python.
this is a small project which provides several mathematical function useful for a chemist or somebody working with mass specs.
The goal is to provide several cuda and c based functions which can be easily accessed using java, groovy and python.
Simple Python class for managing tables of data in memory using NumPy. It allows to give names to views of array. The package contains few classes built on top of the basic one to be used as post processing tools for particle optics computations.
The NMR Restraints Grid (NRG at http://www.bmrb.wisc.edu/WebModule/MRGridServlet) contains the original NMR restraint data (distance, dihedral angle and RDC) and the parsed, converted, and filtered for ~4,000 protein and nucleic acid structures with corr