Search Results for "structure" - Page 68
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Showing 2540 open source projects for "structure"
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Multiverse Explorer
Using Dr. Tegmark's MUH, this program generates a random 'universe'.
Using Max Tegmark's Mathematical Universe Hypothesis, this program generates a random mathematical structure that is, in essence, a universe (if Dr. Tegmark is correct). -
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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EJS
Embedded JavaScript templates for node
...EJS supports both server-side render (in Node/Express) and client-side use in the browser, making it versatile for universal apps. Because you’re using raw JS, debugging is simple—the errors are standard JS stack traces with template line numbers included. While it doesn’t impose a rigid structure (you’re free to organize templates however you like), it works reliably and is simple to adopt. -
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SPADE
A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. -
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Coconut Framework
Base infrastructure for Mac OS X application
Coconut framework is base infrastructure for Mac OS X application. For more details, see the project web page (http://coconut-frmwk.sourceforge.net). -
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libscan3d
a structure from motion library
A C library that offers structure from motion to be used in other applications. -
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XML Content Provider
Plugin to connect XML data sources to the GIN Server
The GIN Server is a semantic middleware for efficient "bottom-up" data integration and automized semantic analysis for dynamically linked data. The XML Content Provider is a configurable plugin for the GIN Server to integrate any XML data source with a simple structure. -
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MolSig
The Stereo Signature Molecular Descriptor
An algorithm to compute molecular graph descriptors considering the stereochemistry of the molecular structure, based on our previously introduced signature molecular descriptor. The algorithm can generate two types of descriptors, one which is compliant with the Cahn-Ingold-Prelog priority rules, and a faster one based on our previous definition of a directed acyclic graph that isaugmented to a chiral molecular graph. -
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Orbus MVC
A fast and easy PHP MVC framework
This project aims to create a simple and useful MVC structure for rapid development of aplications in PHP. The second goal is to provide a solid layout to improve the user interface too. For while, only in Portuguese (BR). Please send questions to magno.mabreu@gmail.com -
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A domain specific language for the specification of biological constructs. One can both specify the structure of the design (its basic elements) as well composites of basic elements. A system of rules for part composition is also provided.
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EmulMultiFit
Simultaneously fit SAS data with polydisperse core-shell-shell spheres
Keywords: -simultaneously fit several SAXS and SANS data sets with polydisperse (Schultz-Zimm or Gaussian distribution f(R)) spherical core-shell-shell nanoparticles -analytical expressions are used for from factor F(Q) and its integral over f(R), no numerical integration required -absolute units -Mathematica is required via console (MathKernel) -Mathematica's local and global optimizers (simulated annealing, differential evolution, Nelder-Mead, ...) can be used -range for fit parameters and further constraints between fit parameters are possible -Monodisperse(!) hard sphere structure factor can be used, too -long computation times (depending on problem size and amount of constraints) from hours to a few days are possible -non-parallelized code -
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Spoon Knife
This repo is for demonstration purposes only
The Spoon-Knife repository is a test project created and maintained by GitHub to help new users learn how to fork repositories and contribute through pull requests. It is intentionally simple, containing minimal HTML and CSS code, so that the focus is on practicing workflow rather than navigating a complex codebase. This project serves as a safe playground where developers can clone, edit, and submit changes without worrying about breaking anything meaningful. The repository is often used in... -
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Shoretel WAV Conversion Tools
Shoretel WAV Conversion Tools
Tools to convert any WAV sound file into the correct WAV format of 64kbps and u-law for use with all Shoretel systems. -
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Yacap
Yet Another Command Argument Parser
... * Easy to configure option sets based on builder patterns * Typed options: boolean, string, int, long, double and enum * Dual POSIX short and GNU long parameter names * Support for unnamed (such as file list after options) and internal options (options are unparsed after --) * One step parsing * Result set with safe and typed getters * Error messages and warnings returned by result set * Text-based help generation, unix-like structure * Highly configurable, formatted output -
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AdLint
Open source and free source code static analyzer
AdLint is a source code static analyzer. It can point out insecure or nonportable code fragments, and can measure various quality metrics of the source code. It (currently) can analyze source code compliant with ANSI C89 / ISO C90 and partly ISO C99. AdLint is written in Ruby. So, it is available for Windows, Mac OS X, GNU/Linux, FreeBSD and any other platforms supported by Ruby. -
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PopR
Analysis of population structure in R with finite and infinite mixture
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DDMsuite
Derivative Difference Minimization Program
...The main advantage of this method is that it does not require the background line modeling or approximations. Eliminating the systematic errors caused by inadequate background definitions, DDM allows structure refinement with increased stability and precision. -
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StabLe
An algorithm for learning stable graphical models from data
Stable Graphical Model Learning (StabLe) is an algorithm for learning the structure and parameters of stable graphical (SG) models from data. Stable random variables are motivated by the central limit theorem for densities with (potentially) unbounded variance and can be thought of as natural generalizations of the Gaussian distribution to skewed and heavy-tailed phenomenon. SG models are multi-variate stable distributions that represent Bayesian networks whose edges encode linear dependencies amongst random variables. ... -
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Distance to Native
Prediction of distance-to-native for protein structure
Prediction of distance-to-native for protein structure using machine learning approach and physicochemical properties. -
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PHP TC
PHP web frontend for configuring the Linux traffic controller.
...To verify your designs and implementations function stable under various networking conditions. TC however is a command line tool. It requires knowledge of queuing disciplines and the syntax to configure a hierarchical structure. This project aims to minimize that complexity by providing a solution that allows you to configure the Linux TC from a web based frontend. -
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GLProbs
GLProbs: Aligning multiple sequences adaptively
...We have also evaluated the practicability of the alignments of GLProbs by applying the tool to three biological applications, namely phylogenetic trees construction, protein secondary structure prediction and the detection of high risk members for cervical cancer in the HPV-E6 family, and the results are very encouraging. -
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DbRevision project aimed to help developers implement automatic upgrade database structure from one reversion to other. DB structure described in independent, XML-based format. All upgrade actions described in XML too.
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AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.
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Calculates Natural Product(NP)-likeness of a molecule, i.e. the similarity of the molecule to the structure space covered by known natural products. NP-likeness is a useful criterion to screen compound libraries and to design new lead compounds. Maven dependancy: <dependency> <groupId>uk.ac.ebi.cheminformatics</groupId> <artifactId>NP-Likeness</artifactId> <version>2.1</version> </dependency> Required repository: <repositories> <repository> <id>ebi-repo</id> <name>EBI maven repository</name> <url>http://www.ebi.ac.uk/~maven/m2repo</url> <snapshots> <enabled>false</enabled> </snapshots> </repository> </repositories> Latest version of the project is available here in our GIT repo https://github.com/CS76/NP-Likeness
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ProximityForest
Efficient Approximate Nearest Neighbors for General Metric Spaces
A proximity forest is a data structure that allows for efficient computation of approximate nearest neighbors of arbitrary data elements in a metric space. See: O'Hara and Draper, "Are You Using the Right Approximate Nearest Neighbor Algorithm?", WACV 2013 (best student paper award). One application of a ProximityForest is given in the following CVPR publication: Stephen O'Hara and Bruce A.