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MVPaa has merged into the automatic analysis project on gihub:
https://github.com/rhodricusack/automaticanalysis
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MVPaa is a MVPA (Multi-Voxel Pattern Analysis) package made for the automatic analysis (http://www.cambridgeneuroimaging.com/aawiki) package.
Ferda is a user friendly data mining tool. It is a modular distributed multiplatform framework based on Internet Communications Engine. Ferda is very powerful in working with association rules.
The Informatics project is an open-source environment that provides a lasting, extensible, platform-agnostic and distributed infrastructure enabling high-throughput informatics, efficient data management, robust genomics analysis and provenance.
GODASM is the brief of ".Gff Organized DataAnalysis System for Microarray Studies". Private programs, GODA system, had been successful developed in 2008 at CGMH,Taiwan. Now the project will transfer GODAs to open-source based system.
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The system searches synonyms (and related words) in Wikipedia. WikIDF generates index database of Wikipedia (for Russian, English, and German). The continuation of this project is "wikokit" at code.google.com
Parallel Colt is a multithreaded version of Colt - a library for high performance scientific computing in Java. It contains efficient algorithms for dataanalysis, linear algebra, multi-dimensional arrays, Fourier transforms, statistics and histogramming
Ginkgo is a spotted microarray data pre-processing platform featuring analysis functionalities for CGH and expression data. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)]
Cougar Squared is a new Java library for machine learning and data mining research, supporting research needs of the community. It is written by researchers for researchers. It extends the WEKA and YALE machine learning frameworks.
IMAS is a Visual Analytics system for the discovery of knowledge in genomic information. IMAS enables genomic scientists to rapidly analyze and visualize a set of microbial genomic sequences using tools such as Glimmer, Blast, Clustal-W, Primer3.
A population-based method for DNA copy number analysis: recurrent copy number aberration indentification in multiple samples (with no need of single-sample calling). Developed for a quick analysis of high resolution and large population data.
This library provides a Ruby interface to Nmap's scan data. This information is presented in an easy-to-use and intuitive fashion for storage and manipulation.
pyastrolib is a python library providing professional astronomers a robust set of tools for astronomical dataanalysis. This project will provide all the functionality as NASA's IDL Astronomy User's Library in addition to other planned features.
Windows application for data mining with self-organizing neural networks. It works with text data files and has convenient user interface. Is solves data mining tasks of class Recognition, continuous value Prediction, and time series Forecast.
rSIGNAL - ruby Simple Inter-Interface Generic Aggregation Layer. It allows external data sources to be aggregated, store the aggregated data and print the aggregated data out in a transformed format to a file (or integrated HTTP server) on demand.
Data mining tool for sequences (e.g. trajectories on a map, visited web pages, etc.) that creates a succinct description of the sequences, given a taxonomy (e.g. regions and sub-regions in the map, categories and sub-categories of pages, etc.).
This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.
Siafu simulates individual agents and their context, from home to city-wide scenarios. As a developer, you use the API to write your simulation for the purposes of data-set generation, test or visualization, optionally hooking it to your own application.
Open Source Particle Image Velocimetry and PIV Analysis
OpenPIV is an initiative of scientists to develop a software, algorithms and methods for the state-of-the-art experimental tool of Particle Image Velocimetry (PIV) which are free, open source, and easy to operate.
bitstring is a pure Python module designed to help make the creation and analysis of binary data as painless as possible. The latest releases support Python 2.6 and 3.x only. For Python 2.4 and 2.5, plus lots more see the googlecode homepage.
Logbus-ng consists in a set of tools to aid developers perform Log Analysis in all the stages: log generation, collection, distribution, storage and analysis. It is designed specifically for Field Failure DataAnalysis in critical distributed systems