Search Results for "pmm-lab" - Page 6
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Showing 374 open source projects for "pmm-lab"
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artext
Probabilistic Noising of Natural Language
Artext is a work on injecting noise into text without affecting the core meaning for a human reader. This kind of data can be useful for many NLP tasks, particulary to make models robust to erroneous text. This is a work in progress, and we will publish the results of our experiments soon. Meanwhile, if you use artext in your research please cite this repository. Github: https://github.com/nlpcl-lab/artext -
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mitigating-stereotype
Mitigating Stereotypes in Word Embedding through Sentiment Modulation
We provide the code and data for the following paper: Mitigating Stereotypes in Word Embedding through Sentiment Modulation by Huije Lee, Jin-Woo Chung, and Jong C. Park. Korea Software Congress 2018 (KSC 2018), Pyeongchang (Korea), December 2018. This repository provides a model that mitigates stereotypes in word embedding through sentiment modulation. The detailed instructions are in the readme file within the zip file. Github: https://github.com/nlpcl-lab/mitigating-stereotype -
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monolingual-sentence-aligner
Monolingual Sentence Aligner
... with custom settings and fixing some output - process.js: The main entry, containing the general flow of processing. Please read Readme.md for more details. Github: https://github.com/nlpcl-lab/monolingual-sentence-aligner -
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DrawGlycan-SNFG
Renders glycans and glycopeptides with frag. info using SNFG format
... in Linux, follow in-package instructions or visit the VirtualGlycome.org FAQ page. The source code can be edited and run using MATLAB2014b or later. How to Cite: DrawGlycan-SNFG: a robust tool to render glycans and glycopeptides with fragmentation information Kai Cheng; Yusen Zhou; Sriram Neelamegham Glycobiology (2017) 27 (3): 200-205 Source code also available at: https://github.com/neel-lab/DrawGlycan-SNFGv2 Abstract & Full Text: https://doi.org/10.1093/glycob/cww115 -
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The purpose of this program is to calculate the phase transformation crystallography after a phase transformation and represent the results in graphical way such as in stereo graphic projection.The most recent crystallographic theories for both martensite and diffusional transformation are included.The variant selection during phase transformation could also be analyzed. The lattice matching near the interface, the superimposed diffraction patterns and so on can be readily simulated with...
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Jupyter Server Proxy
Jupyter notebook server extension to proxy web services.
Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the Python package that provides the main functionality, the JupyterLab extension (@jupyterhub/jupyter-server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example. -
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BeakerX
Beaker Extensions for Jupyter Notebook
... to access multiple languages in the same notebook, and seamlessly communicate between them. Apache Spark integration including GUI configuration, status, progress, interrupt, and tables. One-click publication with interactive plots and tables, and Jupyter Lab. BeakerX is available via conda, pip, and docker. Or try it live online with Binder. All of BeakerX’s JVM languages plus Python and JavaScript have APIs for interactive time-series, scatter plots, histograms, heatmaps, and treemaps. -
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CFD Python
Sequence of Jupyter notebooks featuring the 12 Steps to Navier-Stokes
... (in any language) and some background in partial differential equations and fluid mechanics. The "steps" were inspired by the ideas of Dr. Rio Yokota, who was a post-doc in Prof. Barba's lab until 2011, and the lessons were refined by Prof. Barba and her students over several semesters teaching the CFD course. We wrote this set of Jupyter notebooks in 2013 to teach an intensive two-day course in Mendoza, Argentina. -
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sjcl
Stanford Javascript Crypto Library
The Stanford Javascript Crypto Library is a project by the Stanford Computer Security Lab to build a secure, powerful, fast, small, easy-to-use, cross-browser library for cryptography in Javascript. SJCL is small but powerful. The minified version of the library is under 6.4KB compressed, and yet it posts impressive speed results. SJCL is secure. It uses the industry-standard AES algorithm at 128, 192 or 256 bits; the SHA256 hash function; the HMAC authentication code; the PBKDF2 password... -
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The Citrus project aims at collecting all the code for cancer systems biology developed by the Califano Lab. Including: ARACNe, pARACNe, DIGGIT and CINDy.
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CSS-Vise
A lightweight, minimal and mature vanilla CSS framework.
... and easier to learn minimal framework. - You need a library that is supported by 98% of web browsers. For docs and more visit Vise's github repository https://github.com/Appforge-lab/CSS-Vise -
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A web based electronic lab notebook that is centred around the principles of Research Data Management.
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Amateur Radio Lab
Amateur Radio Lab
An amateur radio Linux has gcc, gcc-c++, gnuradio, gnuradio-devel, gnuradio-examples, gr-iio, gr-iio-devel, python2-gr-iio, quisk, fldigi, fmtools, fmtools-tkradio, fllog, gr-rds, tlp-rdw, ax25-apps, soundmodem, LinLog, flnet, fbb, horst, xlog, libax25, twlog, cqrlog, hamlib-c++, tcl-hamlib, gr-fcdproplus, perl-hamlib, uronode, python2-hamlib, gr-iqbal, python-hamlib, grig, chirp, flmsg, linsim, gr-osmosdr, xpsk31, codec2, xconvers, trustedqsl, libad9361, gqrx, hamlib, hamlib-devel, callgit,... -
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components: • a library of KNIME nodes (called PMM-Lab), • a library of “standard” workflows • an HSQL database.to store experimental data and microbial models. Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public data... -
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Formatomatic
Population Genetic File Creator and Converter
Formatomatic creates infiles for several population genetic analysis programs from csv, genepop or convert* (excel) files. It only handles diploid microsatellite data for now. I may eventually include other read or write formats (email me if there is some functionality you need and I will work on it if I have time). This program was initially developed for in-lab use to format microsatellite data extracted from a custom database system. I have made it available in case it is useful to others... -
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spider tracking
Script developed to extract spider position and velocity in a maze.
This is a simple script designed to track the movement of a spider in a maze. It works under the specific lab conditions used to test the olfactory system in Loxosceles laeta. (https://www.ncbi.nlm.nih.gov/labs/articles/28499023/) However, it can be customized to work on different conditions. -
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Brought to you by Software Systems Lab of Taipei Tech under the supervision of Prof. Yu Chin Cheng, ezScrum is a tool the let you create, manage, and keep the Scrum project information including user stories, tasks, unplanned items, and so on, in your server.
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Freetorials is a free platform lab tool in making interactive, embeddable and stunning tutorials.
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BioNet-Finder
Network-based modeling and analysis for complex biological data
BioNet-Finder is a network-based genomic data modeling project, supported by the Multivariate Statistics lab of the Brain and Behavioural Science Department at University of Pavia (Pavia, Italy), to share data, methods, and code for network-based analysis of complex disorders. Our goal is to provide straightforward tools for data reduction, modeling, and interpretation, avoiding common issues, including data selection, database compositional biases, topological/hierarchical organization of data... -
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MJP Lab is a site where the Modernist Journals Project can upload its MODS and TEI files for MJP journals and make them available for download to the general public. The site will be linked to a website where users can experiment with these files.
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Calcoexa
calcoexa, une calculatrice sur Android
Calcoexa est une calculatrice sur Android developpée par Camerubuntu Lab et permettant de faciliter vos calculs sur Android. -
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Software designed for remediation of dyscalculia (or mathematical learning disabilities) in children aged 4-8 and for teaching number sense in kindergarten children. For more information, visit the unicog lab website using the link below. NOTE: To use The Number Race, you may need to download TWO files, the main program (above), AND a language pack. To get to the language packs, click on "Files" on the menu bar above, and select version and the appropriate language. If you are lucky...
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CRISPRamplicon
A tool for analysis of Genome editing outcomes from sequencing data
CRISPR-Cas9 is a unique technology that enables geneticists and medical researchers to edit parts of the genome by removing, adding or altering sections of the DNA sequence. It is faster, cheaper and more accurate than previous techniques of editing DNA and has a wide range of potential applications. Here, a cost-effective and high-throughput strategy was developed for identifying CRISPR/Cas-induced mutations via CRISPR Amplicon Sequencing (Xie’s lab, http://www.biootools.com/). In particular... -
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CFML fabric simulation engine
3D drape simulation engine using particle based method
This is free library for garment pattern design and 3D simulation by CFML (Computational Fibrous Materials Lab) group for textile engineers. Currently supports MS Windows environment only(compiled with Embacadero C++ Builder XE5). Details on the performance are submitted to the IJCST journal. Garment pattern data: courtesy of Kolon Group, Shinsegye Department Store, KRIFI.re.kr (former Sewtec), Prada and some more. Using the following open sources: - D. Pritchard.org, "freecloth", http...