Search Results for "gnu science" - Page 59

cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks. Latest releases from https://github.com/matthiaskoenig/cy2fluxviz

SIMulation to EXPeriment is software that allows the direct comparison of simulation density information with that obtained from X-ray and neutron scattering experiments, by converting the simulation data to form factors. It also calculates volume probability distributions according to a space filling volumetric model. Written in C++ and Qt, SIMtoEXP has a very simple and easy to use GUI with interactive plotting. The software was originally developed by Norbert Kucerka. The code has...

ExpressionOasis is a java based framework for evaluating the various type of expressions like arithmatic, logic expression etc. The framework is flexible enough to define any new grammer rules or operators.

AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.

Java program for computations with values expressed in terms of physical or other units. Supports complicated mathematical expressions and user-defined functions. Invoked from scripts, line command, or as GUI. Extensive units data base.

Flightdeck-UI is a project that utilizes the ideas from the design of aircraft controls and instruments for creating computer user interfaces, such as for monitoring.

The Cloud Research Simulation Toolkit (CReST) is a cloud computing simulation platform written in Java.

Cyber Knight is a game engine for developing educational software for computer science. The platform features an isometric tile engine and a code visualizer for python.

Originally developped to handle PacBio CCS data for an AAV capsid library. This program will extract, correct, translate and analyze the sequencng data, starting from the CCS fastq file.

GraFIX is a software and a method to detect fixations in low and high quality data, consisting of a two-step process in which eye-tracking data is initially parsed by using adaptive velocity-based algorithms, before it is hand-coded using the graphical interface, allowing accurate and rapid adjustments of the algorithms' outcome. GraFIX is released under the GPLv3 public license (http://www.gnu.org/licenses/). Please cite as: Saez de Urabain, I.R., Johnson, M.H., Smith, T.J., (2014)...

This is clone of the Celestron PECTool used to upload, download and manipulate PEC data. It is intended to work with Celestron Nexstar mounts like NexStar GPS, NexStar GPS-SA, NexStar iSeries, NexStar SE Series, NexStar GT, Advanced-VX, Advanced-GT and CGE mounts. Communication to the hand control is 9600 bits/sec, no parity and one stop bit via the RS-232 port on the base of the hand control. To build it libnexstar version 0.11 or newer is needed, which can be found here:...

The OraVC is a tool to keep track of the versions of a database objects inside the Oracle database without any usage of a third party tools like CVS or SVN. It is pure PL/SQL + Oracle JAVA classes. (c) 2011-... Andrey Tsyganov (contacts A.Tsyganov@rug.nl) NB: this project is distributed under the GNU GPL v3.0 license About: This tool was developer in scope of a Target project (http://www.rug.nl/science-and-society/target/) at The University of Groningen. Project uses code (with small modifications and additions) of the Java libraries of the diff operation implementation by Stuart D. Gathman http://www.bmsi.com/java/#diff Libraries are open and goes under GPL licence Also this project used the following open Web resources in some parts of the Web interface for the OraVC Viewer: http://www.alovefordesign.com/css/create-an-apple-style-menu-purely-in-css3-no-images-required/ http://pythoughts.com/table-style-css/

Educational software for studying quantum mechanics. This is the 3rd incarnation of QUANTX software created for Physics Department of Novosibirsk State University. The first version of this software was used in 1985-1991, and the second one was in use since 1991 till 2011. This 3rd version should be useful for universities of Russia and CIS. Translation into English is underway.

A proximity forest is a data structure that allows for efficient computation of approximate nearest neighbors of arbitrary data elements in a metric space. See: O'Hara and Draper, "Are You Using the Right Approximate Nearest Neighbor Algorithm?", WACV 2013 (best student paper award). One application of a ProximityForest is given in the following CVPR publication: Stephen O'Hara and Bruce A. Draper, "Scalable Action Recognition with a Subspace Forest," IEEE Conference on Computer...

A 3D engine written in Java aimed at students of computer science. This engine makes it very easy to visualize objects and create 3D applications.

QAntenna is able to show antennas in a 3D plot, and calculate it's radiattion pattern. It is capable of working with many antennas at the same time.

ANGEL-Automatic differentiation Nested Graph Elimination Library is a template library using the Boost Graph Library and the Standard C++ Library; it provides sparse representations of c-graphs their dual line graphs and vertex, edge and face elimina

The CM Engine translates digital images of rectangular plates that contain gridded colonies into quantitative data. It currently contains 3 analysis modes to ensure accurate measurements no matter how cells are deposited onto the agar.

This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.

The MEI Score Editor (MEISE) is an eclipse-based music notation editor for the musicological XML-based encoding format of the Music Encoding Initiative – MEI (http://music-encoding.org). It is developed at the Musicology Seminar Detmold/Paderborn, University of Paderborn (http://muwi-detmold-paderborn.de) as part of the german part of the research project "Digital Research Infrastructure for the Arts and Humanities" – DARIAH-DE (http://de.dariah.eu). For detailed information about the...

Implementation in Python of some of the statistical methods provided by "asurv", the survival analysis software.

The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications. Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image...

Statcato is a Java software application for elementary statistics. Its features include data and graph generation, probability distributions, descriptive statistics, confidence intervals, hypothesis tests, correlation, regression, and analysis of var

msBayes allows complex and flexible phylogeographic inference. More specifically, you can test the simultaneous divergence (TSD) of multiple population (species) pairs. It uses approximate Bayesian computation (ABC) under a hierarchical model.

Japrosim is a java library for both discrete event and continuous simulation. GUI for modeling and automatic code generation are offered. An explanation module is integrated. Models are described in XML and owl for interoperability.