Search Results for "gnu science" - Page 56
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Showing 5828 open source projects for "gnu science"
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Library for creating and analyzing voxel objects. This project has moved to github. https://github.com/jonhiller/Voxelyze
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Deem
Analyze time-course data with significance tests, clustering, modeling
Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional... -
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FLASH
Merge mates from fragments that are shorter than twice the read length
FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies. -
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CIG-P
CIG-P is a simple yet flexible data visualization tool
CIG-P is a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset. Publication: CIG-P: Cicular Interaction Graph for... -
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Publist - HTML Publication list generator. Automates most of the chores involved in maintaining online academic publication lists and offers many presentation, filtering and sorting options to use in your web page. Can import & export BibTeX.
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vipR is a program to screen for sequence variants (SNPs, deletions) in sequence data generated by high-throughput-sequencing platforms. Information on this and other projects can be found on: http://www.altmann.eu
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SnowMicroPyn
Python based reader for SnowMicroPen® .pnt measurements
SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer. It is... -
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DL-Learner is a tool for learning concepts in Description Logics (DLs) from user-provided examples. Equivalently, it can be used to learn classes in OWL ontologies from selected objects. As of August 2014, the source code management of DL-Learner has moved to Github: https://github.com/AKSW/DL-Learner Please use this for the latest code and issue tracking and the website (http://dl-learner.org) for general information.
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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Ballistica
Software Defined Scope System
This is an Open Source adaptation of the "Smart Rifle" or "Software Defined Scope System" (SDSS). Open source operating systems helped advance PC technology, making it available for everybody. Ballistica aims to be the "Linux of Smart Rifles": free and open source. The only challenge is the hardware, which must be fabricated by the user, or by any intrepid makers out there. -
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XNBC: neurobiology simulation tool
XNBC is a graphic application to simulate biologic neural networks.
XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results. Written in C, it runs on Unix and Windows. Web site : http://ticemed-sa.upmc.fr/xnbc/ All recent versions are on this site. -
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Gamma Grapher Nano
Gamma Spectrometry using DSO 201 Nano hardware
This software to turn a DSO Nano 201 into a Multi-Channel Analyzer for gamma spectrometry. Software is open source. Support and discussion are through the GammaSpectrometry group at http://tech.groups.yahoo.com/group/GammaSpectrometry/ -
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Java Machine Learning Library is a library of machine learning algorithms and related datasets. Machine learning techniques include: clustering, classification, feature selection, regression, data pre-processing, ensemble learning, voting, ...
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This toolbox generates automatically a vtk-visualization for an ode (Open Dynamics Engine) simulation under Python. You only have to define the simulation space and world and forward these entities to the visualization. That's all... Install also via pip possible: pip install odeViz
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Imview is an image display/image analysis package for Unix and Win32 based on the Fast Light ToolKit (FLTK, also on sourceforge).
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A Scalable Multicore Code for RNA Secondary Structure Prediction
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SetFon focus is an interface web based for Praat resources (www.praat.org) wich focus speech sound annalysis; it is a gerent program for acoustic analysis PHP/Mysql based. Developed with the framework SIMP.
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The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
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A Java web application to support all phases of the organization of scientific conferences from the submission of papers to the production of badges for participants. Corga currently ships with Hypersonic SQL, but can also run on MS SQL Server and MySQL.
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usbpicprog is a Microchip PIC programmer with simple hardware: one PIC18F2550 and some components. It's therefore easy and cheap to build. Usbpicprog consists of 3 components: Hardware, Embedded software and a stand-alone program for Win, Mac and Linux.
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The EasyDIAg toolbox allows the calculation of inter-rater agreement timed-event sequential data taking into account errors of commission and ommision.
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CWIS
Assemble, organize, & share collections of data about online resources
The Collection Workflow Integration System (CWIS, pronounced SEE-wis) is a free, open source software package designed to help assemble, organize, and share information about resources online. The software conforms to international and academic standards for metadata while providing turnkey setup and a user-friendly interface, allowing resource collection developers (and end users) to focus on what they want to share (or find) without worrying about the technical details. CWIS provides...
