Search Results for "data analysis" - Page 53
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Showing 2195 open source projects for "data analysis"
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Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan...
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jChIP
Graphical environment for exploratory ChIPSeq data analysis
jChIP is a GUI-based Java application for ChIP-Seq data analysis. It was created to build binding profiles between proteins and loci in the genome. In addition it computes statistics of the number of loci/positions containing specified amount of tags. jChIP is able to load data in several common formats (SAM, BAM, WIG, BED, Bowtie) and download loci definitions directly from the Ensembl database. -
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QuickNXS
Polarized ToF reflectivity raw data analysis tool
Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps. -
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GeoStrain
Geodynamic strain analysis software
The main purpose of the software is to calculate the crustal strain rates using the least-squares collocation method. The software can simultaneously determine the signal and noise of the velocities at the observation points with the best possible removal of the observation errors, or at any other position with no velocity observation. Furthermore, the software can calculate strain and rotation rate tensors at points of interest, including observation points, grid points, or points along a... -
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UNSW Metadata Stores (ResData)
An institutional research metadata management repository.
ResData is an institutional metadata repository to facilitate effective management, discovery and sharing of institutional research data collections. It integrates with institutional enterprise systems, such as HR and Grant management systems to facilitate re-use of existing information, such as People and Project records. ResData has been developed by the Library Repository Services, University of New South Wales. The work was supported by the Australian National Data Service (ANDS)... -
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PhyloPipe
PhyloPipe is a combination of some polular phylogenetic software
Bioinformatics is a promising interdisciplinary, designed to use a computer to handle large and complex biological data, aiming at revealing the hidden mysteries of biology. Analysis of the evolutionary biology, one of the main branches of bioinformatics, uses several common software such as HaMStR,MUSCLE, RaxML. Running different procedures successively, we can get the evolutionary analysis eventually. Since the input and output data between different software are not always compatible for each other, the intermediate results need to be processed outside these software, which definitely brings trouble for biologists. ... -
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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bnmroffice
Beta version of bnmroffice v2
The program is used for bNMR data analysis. To download the latest version, please follow the link https://github.com/hsaadaoui -
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chipexo
model based analysis of ChIP-exo data
Here we developed a novel analysis framework named MACE (model-based analysis of ChIP-exo) dedicated to ChIP-exo data analysis. MACExo has the following four steps: 1) sequencing data normalization and bias correction; 2) signal consolidation and noise reduction; 3) single nucleotide resolution border detection using Chebyshev Inequality; and 4) border matching using Gale-Shapley’s stable matching algorithm. -
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Accelerated Feature Extraction Tool
A fast GPU accelerated feature extraction software for speech analysis
A fast feature extraction software tool for speech analysis and processing. It incorporates standard MFCC, PLP, and TRAPS features. The tool is a specially designed to process very large audio data sets. It uses GPU acceleration if compatible GPU available (CUDA as weel as OpenCL, NVIDIA, AMD, and Intel GPUs are supported). CPU SSE intrinsic instruction set is used in cases where no compatible GPU present. -
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PalOOCa OpenOffice Extension for Palo
palo olap open office calc plugin for data analysis
The PalOOCa Project offers a fast, flexible and intuitive Office-based Business Intelligence solution based on Jedox. It provides an extension for OpenOffice.org Calc which allows both, read and write, access to data from within the Jedox OLAP Server via Calc. If used together with the Open Source Jedox/Palo OLAP Server it completes the Open Source MOLAP-Stack for Business Intelligence. Additionally to Jedox OLAP it is also (read-only) compatible to (almost) all OLAP servers supporting XMLA. Intended audiences are: - scientific research & teaching - financial analysis & controlling Consult the FAQ in the Wiki. -
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Collective Mind Technology
plugin-based framework for systematic and reproducible experimentation
New version moved to http://github.com/ctuning/ck Collective Mind framework (cM) is an open-source plugin-based schema-free repository and infrastructure for collaborative, systematic and reproducible research and experimentation. This 3rd version (started in 2006) helps to implement, preserve, share and reproduce the whole experimental setup as connected modules and data. cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. For example, it includes multi-objective GCC, LLVM and ICC auto-tuning scenarios using shared benchmarks, codelets, data sets, tools, and combined with classification and predictive models. cM includes OpenME interactive interface to open up and expose internals of various third-party tools such as GCC, LLVM, run-time systems, etc. and connect them to cM through dynamic plugins that allows online analysis and tuning of programs and architectures. ... -
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qtFit is a program used to fit ASCII data. The graphical user interface (GUI) of qtFit is designed using QT software. The regression is done using CERN’s MINUIT routine and plotting is perfomed with the QCustomPlot library. This document is a manual of the qtFit program, and includes instructions about installation, features description, and how-to-use examples.
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SCaVis
Scientific Computation and Visualization Environment
SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. ... -
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GESPA
Accurately predicts disease association of single nucleotide mutations
GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are... -
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MZmine 2
A framework for differential analysis of mass spectrometry data
MZmine 2 is a framework written in Java for differential analysis of mass spectrometry data. -
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bayescount
The bayescount R package
A set of functions to allow analysis of count data (such as faecal egg count data) using Bayesian MCMC methods. Returns information on the possible values for mean count, coefficient of variation and zero inflation (true prevalence) present in the data. A complete faecal egg count reduction test (FECRT) model is implemented, which returns inference on the true efficacy of the drug from the pre- and post-treatment data provided, using non-parametric bootstrapping as well as using Bayesian MCMC. ... -
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DHOME
Open source home automation web interface to analyze your energy data.
DHOME is an open source web interface that controls your home automation box i.e. Zipabox and gathers data from it to have a complete analysis of your energy consumption. The applications provided by home automation companies do not provide deep analysis of data; they do not give you the opportunity to cross different data, merely to visualize a short presentation of your temperature, electricity consumption and other information. Our goal is to give the user full access to all of this, in a simple and intuitive way. ... -
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libltc-delphi
Linear Timecode is an encoding of SMPTE timecode data in an audio sign
Linear (or Longitudinal) Timecode (LTC) is an encoding of SMPTE timecode data in an audio signal, as defined in SMPTE 12M specification. -
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Seer
Seer is a multipurpose data analysis package for Monte Carlo data.
Seer is a multipurpose data analysis package for Monte Carlo simulation data, particularly for collider physics processes. Seer reads LHCO files and performs a variety of cuts and analyses on the data for either exploratory data analysis or reproduction of experimental studies. -
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GUItars
GUItars is designed for the analysis of high throughput RNAi data.
Please refer to the original article published in PLOS ONE at http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0049386. GUItars's user-friendly graphical interface enables rapid analysis of RNAi and small molecule screens. GUItars uses SSMD for hit selection, which is preferred for its ability to diminish sample size effects and the false hit rate, making it superior to other widely used HTS analysis methods. The program can handle the analysis for screens without... -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
...To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs. -
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Manipulation and analysis of psychophysiological data (e.g. peripheral physiology, EEG, MEG). This toolbox has a special focus on time-frequency approaches, including amplitude and phase-synchrony. Developer Project Home: http://www.ccnlab.umd.edu/Psychophysiology_Toolbox/
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify abnormalities from RNAseq data: preprocess: Generates aligned and recalibrated BAM files. ...
