Search Results for "mixture" - Page 4
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Showing 122 open source projects for "mixture"
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AMD_HealthSocialCareSim
Multi-paradigm simulation of health and social care for AMD sufferers
...This is an AnyLogic-based simulation of age-related macular degeneration (AMD), which tries to capture both the detailed operation of an eye clinic and the broader social care of AMD sufferers. It uses a mixture of agent-based modelling (ABM), discrete-event simulation (DES) and system dynamics (SD). It also serves as a demonstration simulation model for the Java Simulation Infrastructure Toolkit (JSIT), using its AnyLogic helper library, and an example of other software-engineering-best-practice ways to structure simulation models (which are covered in the journal paper "Simulation Design: Trans-Paradigm Best-Practice from Software Engineering" which introduces JSIT). ... -
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BiomeNet
BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES
...To infer the structure of community-level metabolic interactions, BiomeNet applies a mixed-membership modelling framework to enzyme abundance information. The basic idea is that the mixture components of the model (metabolic reactions, subnetworks, and networks) are shared across all groups (microbiome samples), but the mixture proportions vary from group to group. Through this framework, the model can capture nested structures within the data. BiomeNet is unique in modeling each metagenome sample as a mixture of complex metabolic systems (metabosystems). -
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PopR
Analysis of population structure in R with finite and infinite mixture
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Programmed in Java, this game is a mixture between FreeCell and normal Solitaire. The current version is Beta v.76.
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Fast Matrix for Java
General purpose matrix utilities for Java in Parallel Computing
Fast Matrix for Java (fm4j) is a general-purpose matrix utility library for computing with dense matrices. fm4j encapsulated different underlying implementations and select the optimal one in run-time depending on the size of the input matrix. Moreover, fm4j employs Java (Tm) Concurrency to take advantage of the computation power of multi-cor processors. -
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MRHMMs
multivariate regression hidden Markov models
It includes a various hidden Markov models: regression, logistic regression, hidden Markov models, and emission probability density of a mixture of multivariate Normal distributions. Also available at https://github.com/yonoklee/MRHMMs Work in progress (Jun 20, 2021 - ) -
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MCTIMME
Microbial Counts Trajectories Infinite Mixture Model Engine
MCTIMME is a nonparametric Bayesian computational framework for analyzing microbial time-series data.The current implementation is in Matlab. -
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DNAcompact
Genome compression algorithm with/without reference (Linux/Windows)
As the technique of acquiring genome sequences advances, the storage and data transferring of large genome data are becoming important concerns for biomedical researchers. We propose a two pass genome compression algorithm, which highlights the synthesis of complementary contextual models and the introduction of logistic regression mixture method, to improve the compression performance. The proposed framework handles genome compression with and without reference seque- nces, and demonstrated performance advantage over the best existing algorithms. The proposed method without a reference led to bit rates of 1.720 and 1.838 bits per base for bacteria and yeast, which are approximately 3.7% and 2.6% better than the state-of-the-art algorithm. ... -
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GalGen Trader
A 2D Elite-style game written in Python 3.2.
...This functionality is supported by the game being written in Python 3, with its powerful support for including external code at run-time. The graphics will be a simple mixture of 2D raster and vector imagery with text-based menus, and the music will be highly reminiscent of the 80's 'chiptunes' that made up the soundtracks for games on the Amiga and Commodore 64. -
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KlustaKwik is an open-source C++ and Java program for automatic clustering of continuous data into a mixture of Gaussians. The program was originally developed for sorting of neuronal action potentials, but can be applied to any sort of data. NOTE (25/04/12): For those interested in trying the new masked version of KlustaKwik designed for large dense electrode array, download KlustaKwik3.0.1 in the maskedKlustaKwik folder. UPDATE (04/07/12): Bugs have been fixed in the new masked version of KlustaKwik. ...
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Mixture3D
A simple tool to create a 3D mixture
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MercuryBoard is a powerful message board system dedicated to raw speed with a mixture of features, ease of use, and ease of customization coupled with expandability, and diverse language services.
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This project hosts tools used for analysis of Gaussian Mixture Distributions (GMDs) which are used for statistical signal processing. The tools are libraries for implementing GMD operations and programs used to analyze properties of GMDs.
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XML Document Validator is a Java implementation of CLiXML - Constraint Language in XML - that allows to express complex constraints about XML content using a mixture of first order logic and XPath.
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ENIGMA is a free game and application development toolkit, utilizing GCC and a series of parsers to convert a high level, script-like language based on Game Maker's GML, into C++. The toolkit employs a mixture of both C++ and GML, accepting either.
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Flexible engine for Web based online multiplayer games. The games developed on top of it should be a mixture of real time and turn based strategy games nowhere found before.
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Simple and extensible java configuration framework/component/API able to read XML, LDAP, dB, JNDI, system props, ini files... data as configuration sources. Supports a mixture of all. Also allows to export (parts of) configuration data in other formats.
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awzMB is a very configurable mixture of a guestbook, weblog and contact form based on PHP and MySQL, which is able to manage multiple user accounts.
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kiki the nanobot is a 3-D puzzle game. It is basically a mixture of the games Sokoban and Kula-World.
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MechForce is the coolest shareware game on the Amiga (IMHO). It's a mixture of realtime and turn based strategy/tactic game based on BattleTech. This is an attempt to recreate this game with a lot of enhancements with the help of the Allegro library.
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clusterviz allows to cluster three-dimensional data. The clustering process is visualized using OpenGL. As clustering algorithms the family of k-means algorithms is implemented, including mixture models.
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Candide aims to be a unique piece of software in an otherwise crowded and monotonous field. Candide (blog) is a unique mixture of OO-PHP, JavaScript and other tricks which combine to create a blog which is both interesting to look at as well as work with
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Computergame which uses the Irrlichtengine for graphics and the ODE-engine for physics. It's a racing-game, but you don't drive with cars - you fly with glider about 0.5-1 metre in the air. It's fast and fun. It's like a mixture of f-zero and a norma
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JPop is a plugin that integrates the poplog (http://sourceforge.net/projects/openpoplog) environment as a plugin for the jedit (http://sourceforge.net/projects/jedit) programmers editor. The plugin is written in a mixture of Java, pop11, and beanshel
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