Search Results for "assembler" - Page 4
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Showing 242 open source projects for "assembler"
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Metalasm is a classic meta-assembler for the generation of horizontal microcode for microcoded state machines. Meta assemblers has been used to design computer hardware (cpus, disk controllers, io controllers etc). Metalasm uses the Haskell fp language.
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Opera
An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads. An updated version called OPERA-LG has been re-engineered with features for the assembly of large and complex genomes. -
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GFinisher
genome assembler finisher, gap, gap close, sort contig
GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references. contact dievalg at gmail.com -
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Lilac - a Java assembler
An assembler and disassembler for the JVM (Java Virtual Machine)
Lilac is a tool suite, which contains an assembler and a disassembler for the JVM (Java Virtual Machine) bytecode. The assembler takes textual representations of Java classes, written in an assembler-like syntax, and converts them to binary Java class files, which can be loaded into JVM. The disassembler takes binary Java class files and creates out of them assembler files suitable for the assembler. -
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SWAP-Assembler
A scalable and fully parallelized genome assembler
There is a growing gap between the output of new generation massively parallel sequencing machines and the ability to process and analyze the sequencing data. We present SWAP-Assembler, a scalable and fully parallelized genome assembler designed for massive sequencing data. Intend of using traditional de Bruijn Graph, SWAP-Assembler adopts multi-step bi-directed graph (MSG). With MSG, the standard genome assembly (SGA) is equivalent to the edge merging operations in a semi-group. Then a computation model, SWAP, is designed to parallelize semi-group computation. ... -
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SAT-Assembler
Scalable and accurate targeted gene assembly for large-scale NGS data
SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms. -
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Relaunch64
Relaunch64 is a program (text-editor) for C64-asm-coding.
Relaunch64 is a program (text-editor) for asm-coding on Windows, Mac and Linux, written in Java. This editor works together with common crossassembler like Kick Assembler, ACME or c64tass. Beside the typical texteditor-features, Relaunch64 offers special syntax highlighting, user-defined scripts for compiling and running sources, easy navigation through all opened source code files, auto-completion and much more... -
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Hex File Loader
A software for upload .hex files to ATMEGA328P and compile .asm files
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DNA Scissor is new software which provides users with a set of easy-to-use tools to perform several operations mainly: quality trimming, vector masking, vector-like contaminants removal, and repeats identification.
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BASE
a fast and accurate de novo genome assembler for longer NGS reads
BASE is developed for assembly of longer NGS data especially for HiSeq and MiSeq data. Deeply sequenced small genomes and large genome are all could be assembled well. You can also find the files in github: https://github.com/dhlbh/BASE -
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EasyPowoliX64
An assembler language emulator to lean it easily!
This is a simple simulator of a simple form of Assembler. An assembly language (or assembler language) is a low-level programming language for a computer, or other programmable device, in which there is a very strong (generally one-to-one) correspondence between the language and the architecture's machine code instructions. You will get into the coding with assembler with this easy form of assembler language. -
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This an open source console-based simulator for both the Motorola EXORciser M6800 development system and the SWTPC 6800 computer system. It runs in Linux or Windows under Cygwin. Debugger, assembler, disassembler and MDOS filesystem included.
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miRLAB
miRLAB: an R package for exploring miRNA-mRNA regulatory relationships
...The package provides a complete set of pipelines for testing new methods and analysing new expression datasets. miRLAB includes a pipeline to obtain matched miRNA and mRNA expression datasets directly from The Cancer Genome Atlas (TCGA, based on TCGA Assembler), the benchmark computational methods for inferring miRNA-mRNA regulatory relationships, the functions for validating the predictions using miRNA experimentally validated target data and miRNA transfection data, and tools to compare the results from different computational methods. -
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Structured Macros for 8051
Structured programming in 8051 assembler
Allows the use of structured programming in assembler -
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armgba
GBA ARM Assembler
ARM assembler with FASMARM, Flat Assembler, GameBoy Advance -
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fasmwm
FASM Windows Mobile Preview
Created with FASMARM assembler. -
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armvd
ARM Visual Disassembler
Created with Flat Assembler + Z macro language. -
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OSCAR - DOCSIS
OSCAR - OpenSource Cablemodem file AssembleR - DOCSIS
OSCAR is a Java-based CableLabs® Configuration File Builder API for DOCSIS®, PacketCable™, DPoE™, and DPoG™ Report Issues: https://github.com/Comcast/Oscar/issues Github Wiki: https://github.com/Comcast/Oscar/wiki -
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Simple 8-bit Assembler Simulator
Simple 8-bit Assembler Simulator with Angular.js
A simulator that provides a simplified assembler syntax (based on NASM) and is simulating an x86-like CPU. Press Help inside the simulator to see an overview of the supported instructions. Make sure you have Grunt installed to compile the asmsimulator.js script. Run grunt to build the project. The simulator is written in JavaScript with Angular and runs on every device with a web browser. -
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Saro
Optimization of files placement in solid archives
Program sort files by minimal compressed size, placing similar files near each other. Another attempt to use assembler. -
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ZILF
This repository is deprecated. Use Heptapod instead.
...Please use the Heptapod repository instead: https://foss.heptapod.net/zilf/zilf ZILF is a set of tools for working with the ZIL interactive fiction language, including a compiler, assembler, disassembler, and game library. -
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SATRAP01
SOLiD Assembler TRAnslation Program
SATRAP, a computer program designed to efficiently translate de novo assembled color-space sequences into base-space. The program was tested and validated using simulated and real transcriptomics data; its modularity allows easy integration into more complex pipelines, such as Oases for RNA-seq de novo assembly. -
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EBARDenovo
Highly-accurate de novo assembler of paired-end RNA-Seq
A highly-accurate search-based de novo assembler of paired-end RNA-Seq for advance transcriptomic study.
