Search Results for "data collection algorithm" - Page 38
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Showing 1337 open source projects for "data collection algorithm"
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QDepo
QDepo - formerly known as TPDA - Query Repository Tool
QDepo - A desktop application for retrieving and exporting data from relational database systems to spreadsheet files, also formerly known as "TPDA - Query Repository Tool". The graphical user interface is based on wxPerl or PerlTk. The main feature of the application is the SQL query repository management. The repository consists from a collection of XML files that ca easily be moved or copied to other computers. -
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HyCuda
Hybrid Framework Generator for CUDA
...The generated code contains a lot of template metaprogramming (TMP), to make sure the decision for an algorithm to run on the CPU or GPU has already been made at compile-time. The same holds for the decisions whether or not to transfer data. This amounts to 0 runtime overhead. -
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SilentEye is a cross-platform application design for an easy use of steganography. It provides a pretty nice interface and an easy integration of new steganography algorithm and cryptography process.
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SPE Toolbox
MatLab functions for reading WinView/WinSpec .spe files
This toolbox is a collection of MatLab functions for reading WinView/WinSpec files (.spe extension) directly to MatLab. It provides functions for reading full header from file into a structure, reading frames into matrices, and reading pixel values across all frames. You can use these functions to analyse and process experiment data stored in .spe files in MatLab, and to write functions to export .spe files to animated GIFs for use in presentations. -
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Fileprivacy
Fileprivacy easily encrypts your files
...#######BETA 2####### Bugfix - Beta 1 stopped working if filename was too short or long - added .exe file ####### NOTE ####### This is an early beta implying there are some issues left. The Keygenerator stops working if you change the algorithm after setting the keylength. It has to be restarted for further use. Because there are no start scripts, yet, you have to start Fileprivacy from console by typing: java -jar Fileprivacy-1.0_<version>.jar ####### ALSO NOTE ####### The author of this software is not responsible for the safety of your data. There is no guarantee that one or more of the implemented algorithms cannot be compromised. -
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H3M2
H3M2: Detection of ROH from whole-exome sequencing data
...We recently published on Computational and Structural Biotechnology Journal (CSBJ) a novel software package, named AUDACITY, for the identification of Runs of Homozygosity by using VCF files from whole-exome and whole-genome sequencing data generated by second generation sequencing technologies. (https://www.sciencedirect.com/science/article/pii/S2001037020303354). AUDACITY is freely available at https://sourceforge.net/projects/audacity-tool/. H3M2 is novel computational approach for the identification of Runs of Homozygosity by using whole-exome sequencig data generated by second generation sequencig technologies. ###################################################################### The H3M2 algorithm has been published on Bioinformatics. ... -
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ABM-Calibration-SensitivityAnalysis
Codes and Data for Calibration and Sensitivity Analysis of ABM
Find here the model, code, and example results of parameter fitting/calibration and sensitivity analysis for an agent-based model using NetLogo and R. The corresponding manuscript is published in Journal of Artificial Societies and Social Simulation as: Thiele JC, Kurth W, Grimm V (2014): Facilitating parameter estimation and sensitivity analysis of agent-based models: a cookbook using NetLogo and R. <http://jasss.soc.surrey.ac.uk/xx/x/x.html> Methods/Techniques used are: a.... -
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PyGAO
Genetic Algorithm Optimization for Python
A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. -
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Collection of file-oriented tools implemented in java to perform common and specific file operations. Sample of common task: command-line file editor (cut, paste, append, etc). Sample of specific task: fix RAR archive with broken file header(s).
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ANDS-funded QUT Projects
Creation of a metadata store & high quality research data descriptions
...The ANDS/QUT RDA Gold Standard Record Exemplars project aims to produce a number of gold standard records for RDA, as well as a report with recommendations and a return on investment assessment. Concurrently, QUT Library and the High Performance Computing and Research Support team are working to develop a fully integrated data registry system which automates the collection of data from related University process systems. This will ensure that high quality metadata records describing research datasets can be created. Source code and software arising from the projects will be displayed here. -
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NNBrain
A free, open source collection of neural network based AI agents.
NNBrain is a free and open source collection of artificial intelligence agents. These agents have applications in video games, research, business, and more. The included agents function in both discrete and continuous action and state spaces. -
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ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes
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QPass is easy to use, open source password manager application with built-in password generator. You can store in it's database such data as passwords and logins which will be encrypted using AES-256 with PBKDF2(number of iterations set by user). Each entry can include additional information about entry such as name, url adress and description.
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Clojure Cookbook
This is the home of O'Reilly's Clojure Cookbook
Clojure Cookbook is O'Reilly's editorial collection of Clojure “recipes” — curated pairs of common programming problems with idiomatic solutions, code examples, and explanations. It's designed to serve both as a tutorial and problem-solving reference in real-world Clojure development. Clojure Cookbook doesn't just teach you Clojure, it also shows you how to use the language and many of its common libraries. The most difficult part of mastering any language is knowing how to apply it, in an... -
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bioluminescence
A java library for polymorphic genome assembly.
Bioluminescence is a java library for facilitating de novo genome assembly in the context of reads sampled from a single highly-polymorphic diploid individual. Bioluminescence implements a novel algorithm which uses an artificial neural network to classify contigs in a genome assembly as haplotype-specific or not-haplotype-specific. It then uses this information to partition the original input read set into two subsets, each of which has been enriched for one of the haplotypes. Initial results using this technique have dramatically improved de novo asseblies of such data. ... -
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Karma tool is a standalone tool that can be added to existing cyberinfrastructure for purposes of collection and representation of provenance data. Karma utilizes a modular architecture that permits support for multiple instrumentation plugins that make it usable in different architectural settings.
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Unsupervised TXT classifier
Classify any two TXT documents, no training required - JAVA
This program is made to address two most common issues with the known classifying algorithms. First, over-training and second, shortage of data for a training of categories. Instead, each TXT file is a category on its own, rather than an assigned category. In a way, this is similar to clustering but not really a clustering algorithm since there is some training involved. The summarizer from Classifier4J has been adjusted to accept two inputs (lets call them A and B). Then, the summarizer gets trained with A to summarize a document B, and vice versa. ... -
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3DScape is the first plug-in which enables three-dimensional network visualization in Cytoscape. 3DScape features include accessing graph appearance, layout algorithm, and animation effects on a series of expression data.
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virHap
A Software package for Inferring the haplotype structure of a mixed vi
PhyVar is an open-source software package for viral quasi-species reconstruction, which makes use of a novel phyloprobabilistic approach to infer the sub clonal composition and evolutionary history of a viral population from NGS data. The program aims to characterize and quantify the composition, the abundance and the evolutionary path of the underlying viral population within a given host by analyzing Next Generation Sequencing data. The program takes as input the collection of reads (or several collections of reads in case of many data samples) and the reference genome and it constructs the evolutionary tree exhibiting the species abundance profile and the list of haplotypes along with their prevalences. -
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FreDec
Parallelized FREquency DEComposer algorithm
This is a parallelized algorithm performing a decomposition of the time-series data into a number of sinusoidal components, disentangling them from the white Gaussian noise. The algorithm analyses all suspicious frequencies, including the ones that look like an alias at a glance, but may become preferable later. After selection of the initial frequency candidates, the algorithm passes through all their possible combinations and estimates their multi-frequency statistical significance. ... -
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AlgART Java Libraries
Open source library for processing arrays and matrices
AlgART Java libraries for processing arrays and matrices are open-source product, distributed under MIT license. So, anyone can use them for free without any restrictions. Main features: 63-bit addressing of array elements (64-bit long int indexes), memory model concept (allowing storing data in different schemes from RAM to mapped disk files), wide usage of lazy evaluations, built-in multithreading optimization for multi-core processors, wide set of image processing algorithms over... -
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Java generic Iterator implementation to generate permutations and combinations. Uses the algorithm described here http://en.wikipedia.org/wiki/Steinhaus%E2%80%93Johnson%E2%80%93Trotter_algorithm#Even.27s_speedup and the clear description of that algorithm here: http://www.cut-the-knot.org/Curriculum/Combinatorics/JohnsonTrotter.shtml
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Arthropod Easy Capture
An arthropod specific, specimen level data capture application
...This includes the application of Globally Unique Identifiers (GUIDs) for specimens, and mapping relevant data fields to DarwinCore. iDigBio is the aggregator for all of the ADBC Thematic Collection Network projects, including trophic level interaction data from the Tri-Tropic Interactions TCN. -
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Classical Apriori and Reverse Algorithm
Apriori Algorithm and its Reverse Approach with Comparison
Apriori Algorithm and its Reverse Approach with Comparative Analysis in terms of Execution Time Apriori Algorithm is used in Data Mining for Association Rule Mining -
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grn_inference_multigpu
This project is a exhaustive search algoritm for multiple GPUs
Gene regulatory networks (GRN) inference is an important bioinformatics problem in which the gene interactions need to be deduced from gene expression data, such as microarray data. <br> Feature selection methods can be applied to this problem. A feature selection technique is composed by two parts: a search algorithm and a criterion function. Among the search algorithms already proposed, there is the exhaustive search where the best feature subset is returned, although its computational complexity is unfeasible in almost all situations. ...