Search Results for "mapping" - Page 27
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Showing 1800 open source projects for "mapping"
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QAmiRSeq
A strand aware pipeline for accurate quantification of miRNAs/isomiRs
We designed and implemented a pipeline called QAmiRSeq for fast and accurate quantification of both known miRNAs and isomiRs from high throughput sequencing. QAmiRSeq reconciles its implementation with the unique nature of miRNAs. It is the first algorithm that takes advantage of the strand information for more accurate quantification. All analyses results are organized in a user friendly manner, accessible via a web interface, and can be drilled down interactively by investigators or... -
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HORK
HORK v1.1 Object Relational Mapping (ORM) toolKit
HORK stands for: HORK Object Relational toolKit. HORK is an open-source Object Relational Mapping (ORM) toolkit for database systems. HORK supports SQL Server and DBLX, and we will be adding support for other databases as the project moves along. HORK was designed by developers that use ORM frameworks every day. HORK will eventually provide everything needed in an ORM, but will have to retain its low complexity and very good performance. -
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The Jcptbr is a framework for object-relational mapping written in the Java language. This framework addresses the problem of incompatibility between object and relational models, without the necessity of using xml for the mapping.
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GeoGig
Distributed Version Control System for Geospatial data
Welcome to the GeoGig project, exploring the use of distributed management of spatial data. GeoGig draws inspiration from Git, but adapts its core concepts to handle versioning of geospatial data. Users are able to import raw geospatial data (currently from Shapefiles, PostGIS or SpatiaLite) in to a repository where every change to the data is tracked. These changes can be viewed in a history, reverted to older versions, branched in to sandboxed areas, merged back in, and pushed to remote... -
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node-orm2
Object Relational Mapping
Supported: 4.0 + If using Nodejs >= 14 & Postgres, you must use pg driver >= 8.1. v7 doesn't work correctly (tests time out). Tests are run on Travis CI If you want you can run tests locally. Create Models, sync, drop, bulk create, get, find, remove, count, aggregated functions. Create Model associations, find, check, create and remove. Define custom validations (several builtin validations, check instance properties before saving - see enforce for details). Model instance caching and... -
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XASTIR
Multiplatform Ham Radio APRS and Mapping Program
...Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE. -
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It gives facility of collecting tweets through Twitter Streaming API w.r.t different search criteria and to save tweets in CSV and ARFF (WEKA) file formats.
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strato
模块化Web开发框架
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ThinORM
A lightweight ORM that does not require annotations.
This project was the result of working on systems constrained to versions of Java < 1.5 and including a great deal of code dealing with object persistence. This project was essentially a proof-of-concept to determine whether or not I could create, essentially, an alternative to JPA that did not rely on annotations. I was able to create a working system, and a fairly lightweight one at that, but it would require a great deal of work to be production ready. -
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A PHP and JavaScript Web mapping framework and demo application for MapServer (see http://mapserver.gis.umn.edu) based on MapScript/PHP.
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Question Answering Corpus
Question answering dataset in "Teaching Machines to Read & Comprehend"
RC-Data is a dataset generation framework created by Google DeepMind to produce large-scale reading comprehension question-answer pairs from CNN and Daily Mail news articles. The dataset, introduced in the 2015 paper “Teaching Machines to Read and Comprehend” (Hermann et al., NIPS 2015), was among the first large corpora designed to train and evaluate machine reading and comprehension models. The repository provides scripts for downloading archived CNN and Daily Mail articles from the... -
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Protospacer Workbench
CRISPR/Cas9 guide-RNA design
...The main difficulty arises from the need to identify potential off-targets that may be quite different from the intended target. Current online tools for guide-RNA design provide a user friendly interface to sequence mapping software such as Bowtie or BLAST. However, while fast, these mapping algorithms were not designed with a high tolerance to error, a feature critical to determining potential off-targets. Where online tools fail, offline tools succeed. However, offline tools require knowledge of the command line which few, who employ CRISPR, have. ... -
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MIPVAR
MIP VARiant calling tool
A Java application to analyse Molecular Inversion Probe sequencing data within short time. Running the pipeline requires previous installation of three general tools: BWA, GATK and Bedtools. Input: For running the pipeline you need to specify 3 arguments. An example of the command is given below. The two input files are essential to specify the sample and run configuration. The environment argument should always be set to EMPTY. A brief description of other required files can be found... -
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Icarus Scene Engine
3D .NET engine for Windows, Linux, Mac
Icarus Scene Engine is a cross-platform, CLS-compliant 3D framework, integrating open source APIs into a cohesive all-open-source, all .NET solution. For Windows, MacOSX & Linux. Uses OpenTK, OpenGL, OpenAL APIs for graphics and audio. Runs on Mono/.NET. Links to FFMpeg for streaming video, and FreeType as a temporary conversion mod to bring fonts into a native XML format. Binary builds of Icarus will be infrequent, roughly every 18 months or so, the GIT code updates regularly on a... -
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neobundle.vim
Next generation Vim package manager
...It lets you declare plugins in your vimrc and handles fetching them from Git repositories, local paths, or archives, then loads them into your runtimepath automatically. One of its core ideas is lazy loading: you can defer plugin initialization until a command, mapping, filetype, or event is triggered, which helps keep startup fast even with many plugins. NeoBundle also understands plugin dependencies and post-update hooks, allowing complex setups to be reproduced reliably across machines. It supports version pinning and branch selection so teams can stabilize on known-good revisions. Although Shougo later introduced dein.vim as the modern successor, NeoBundle remains a usable, declarative way to manage plugins on classic Vim setups. -
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For the process of RDF dataset transformation the R2R Framework specifies a mapping language and an implementation in form of a a Java API. More infos at: http://www4.wiwiss.fu-berlin.de/bizer/r2r/
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RouteCngFinder
Planning a route and search for Cng/Lpg stations along a route
RouteCngFinder calculates a route and shows the natural or liquid gas (CNG, LPG) filling stations along the route or at refueling stops in distances of the cruising range. 2.300 CNG and 12.300 LPG stations in Europe are provided. Based on GoogleMaps -
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Android_Tilt-MAME
because touch-screen controls suck
MAME & NEO-GEO emulator with full tilt sensor control support, and online scoreboard (experimental). Supports selected number of games already suitable or specially configured for tilt controls. Also supports external input devices and mapping to phone hard keys. Derived from MAME4droid additionally improving performance, addressing frame-rate issues, and fixing audio glitches. Compatible with GP2X MAME4all (MAME 0.37b5) roms. BACK is default button for 'Insert Coin' and 'Game Start' menu VOLUME UP & DOWN is default mapping for Button1 and Button2 Lousy touchscreen, no more. ... -
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Fielddata Mgr
Land survey field crew data management for .RAW and .JOB file types.
Fielddata Mgr Overview This is a Python program, which means that one must install the open source freely available Python interpreter and a few required also open source, freely available modules that support the functionality of the program. The program "Fielddata Mgr", is customized for the Rick survey department, in such that it supports up to 9 chiefs, each having their own folder in one location, 2 supervisers, each with a PC on the network, and access to a main... -
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allim
Allelic imbalance meter (Allim), a new tool for measuring allele speci
...This estimated mapping bias is then incorporated in the statistical tests for allelic imbalance -
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Re-Annotator
Re-annotates Microarray Probes
The microarray technology is an established approach for high throughput gene expression analysis. An accurate mapping between array probes and the genes that they are targeting is essential for generating accurate biological findings. The manufacturers typically provide such annotation tables. However, these tables rely on older genome and transcriptome versions that differ substantially from the current state-of-the-art sequence databases. -
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de novo assembly validation
de novo clustering of assembled contigs into two groups
...For non-model organisms, without reference genome, it is very hard to state that which contig is correct and which is not. With this project, the proposed unsupervised clustering method (K-means) based clustering is done utilizing the depth of reads mapping based coverage information. The coverage based features are used for clustering. The same can also be found at SCBB software page (http://scbb.ihbt.res.in/SCBB_dept/Software.php). -
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MutAid
MutAid: Sanger and NGS based pipeline for mutation screening.
...MutAid can analyze and interpret raw sequencing data produced by Sanger or several NGS sequencing platforms. It performs format conversion, base calling, quality trimming, filtering, read mapping, variant calling, variant annotation and co-analyze Sanger and NGS data under a single platform. It is capable of analyzing reads from multiple patients in a single run to create a list of potential disease causing base substitutions as well as deletions and insertions. MutAid has been developed for expert and non-expert users and supports four sequencing platforms (Sanger, Illumina, 454 and Ion Torrent) and five read mappers including BWA,TMAP, Bowtie,Bowtie2 and GSNAP and four variant callers -
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An extension to the desktop globe marble, providing the following additional modules: pixel maps, statistics module, 3D view
