Search Results for "gnu science" - Page 25
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Showing 5828 open source projects for "gnu science"
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selectseq
Get specific sequences from a FASTA or FASTQ file.
A command-line utility to manipulate biological sequences from a FASTA or FASTQ file. It can, given a list of identifiers, get only a subset of the sequences (or their complement, i.e., sequences NOT in the list). Can also get sequence number N only. Compressed sequences files are supported if readable by zcat. -
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Alevin2
Tool for the evaluation of ALgorithms for Embedding VIrtual Networks
ALgorithms for Embedding VIrtual Networks Software to evaluate Virtual Network Embedding Algorithms. -
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The MCAPL Project provides a tool for prototyping BDI agent programming languages and model checking programs written in these languages via an interface to the JavaPathfinder model checker.
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AnharmoniCAOS
Cagliari-Orsay model for anharmonic molecular spectra in 2nd order PT
Given dynamical coefficients and/or derivatives of the ionic potential with respect to normal (harmonic) vibrational modes, compute anharmonic energies and electric dipole-permitted transitions and intensities using nearly-degenerate perturbation theory (i.e. properly accounting for Fermi and Darling-Dennison resonances). -
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Hammurabi Code
Astrophysical magnetic fields simulator
Hammurabi is a HEALPix-based tool for simulating observables such as polarized synchrotron and thermal dust emission from models of physical inputs such as magnetic fields, dust and electron distributions, etc. It is a modular C++ framework into which you can add your own models easily and then use it to perform the line-of-sight integration to compute the observables. See the wiki for installation and usage information. Please cite the original Waelkens et al. (2009) paper if you use... -
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Universal Password Manager
Store all your passwords in one secure encrypted database.
Universal Password Manager allows you to store all your passwords in one highly secure encrypted database. Its strengths are simplicity, portability and security (uses 128bit AES encryption). UPM is available on Android, Windows, OS X & Linux. -
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e-Species
A taxonomically intelligent biodiversity search engine
This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's. -
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MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
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TreeGraph
Information Manager(split/analyze/compare/combine).
For Homepage, Blog, Family Tree, Database, C#|hjt|js|chm Editor. Convert hjt2xml, (c#)cs2xml, chm2xml, js2xml, xml2cs, xml2js, xml2hjt, cs2hjt, hjt2cs, cs2chm, hjt2chm. IE/Opera/Firefox/PocketPC supported. -
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Tools for MassWiz add-ins and pre- and post-database search analyses programs. It houses FlexiFDR, ProteoStats and ProteomeAnalyst. https://pubs.acs.org/doi/abs/10.1021/pr200031z Check out the wiki site for help and support - https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=Main_Page
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A compiler library for a language integrating all that is needed for completely defining whole sound/music compilations. From very basic stuff as defining oscillators etc in all their parameters up to note events and more.
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MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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Virtual Laboratory Environment
A multi-modeling and simulation environment to study complex systems
VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical... -
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A command-line tool for numerical reconstruction of digital holograms (formerly known as "HoloPlay")
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Scientech Minecraft Mod
A Minecraft Mod for science and technology
A simple Minecraft mod for Science and Technology. Technotype's first Minecraft mod. (alpha) -
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SystemC Network Simulation Library (SCNSL) is an extension of SystemC to allow modelling packet-based networks such as wireless networks, ethernet, fieldbus, etc. As done by basic SystemC for signals on the bus, SCNSL provides primitives to model packet trasmission, reception, contention on the channel and wireless path loss. The use of SCNSL allows the easy and complete modelling of distributed applications of networked embedded systems such as wireless sensor networks, routers, and...
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GMOL
A tool for 3D genome structure visualization
GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project... -
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Sciatrope
An application for eclipse chasers, by an eclipse chaser.
Sciatrope is a Cocoa (macOS) application made by an eclipse chaser for eclipse chasers. It helps preparing for, and observe, any solar eclipse. It gives the eclipse circumstances, distance and direction to the central line. Observing location can be provided by the Mac, an external GPS, by location name, from a previously saved favorite location, or by latitude and longitude. Eclipse circumstances are displayed in tabular form, on a map, a compass, or in an image, with azimuthal or... -
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A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer
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Finite Transform Library
A Library is for Finite Transforms
The Library is for Finite Transforms such as the Number Theoretic Transform (NTT) and Finite Radon Transform (FRT). Current modules include NTTW for NTTs with high resolution (microsecond) timing, basic array and imaging. The transforms are optimised for performance. -
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libirt
The new site is at http://psychometricon.net/libirt/
The new site is at http://psychometricon.net/libirt/ Library of functions to estimate the items and abilities from the responses of subjects to a questionnaire. The IRT models supported are the logistic model, the multivariate logistic model, the graded model and smoothing by penalization and kernel. -
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