Search Results for "trim" - Page 2

Reference based analysis 1.Filter the raw reads obtained from Illumina Raw Data (paired-ends)according to your desired stringency, to produce a set of high-quality (HQ) sequences in fastq format. 2.Lignment reads (HQ, Fastq format) against Barcode file (Fasta format) using scanAP program. 3.Trim barcodes and filter paired-ends using trim_seq.pl. Classified paired-ends using fltfastq2pe.pl. to produce output “R1.trim.pair.fastq” and “R2.trim.pair.fastq”. 4.The filtered sequence reads were aligned to the reference genome using the Bowtie2, allowing a maximum of four mismatches and one gap of up to 3 bp. Using the SAMtools pileup command the variable positions (SNPs) were determined. 5.AFSM_meth_V_1.0.pl are used for analyses of AFSM methylation results were based on comparisons of assembled sequences . ...

Row-Bean is a CSV-Bean JAVA API . Row-Bean provides CSV reader an writer. More ever provides a mechanism to map csv file content to java beans and revers. For each use, a XML description must describe the wished mapping. Another possibility consists in use Annotations. Use under maven : <!-- row bean with annotations...

A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.

trimMate is a tool to remove junction adapters as well as sequencing adapters from mate pair libraries and trim the sequences accordingly. It works on fastq files generated by next generation sequencing (NGS) machines. The release is source code only, please download from version control.

...It use python 2.7 (+PyPdf) with pypdf module, pdflatex (texlive). Its a latex code generator is flexible enough and can impose flatwork and sadllestitch (it have option for creep compensation) and books with collation marks, trim marks etc. Now impositor2 have fixed some bug and have some pseudointerface, using great program http://www.farmanager.com/index.php?l=en with plugin "block processor". You can use alsu vim and emacs. The latex file is generatig by runiin command from commad line such - "python.exe *.ini", where is *.ini -config file for you imposition. ...

This is simple command line tool to batch process source code files to remove trailing whitespaces and convert all line endings to your system native style. Usage example: trimlines d:\Projects\SomeProject\src *.c;*.cpp;*.h;*.hpp;*.inc .svn;.git With this command all files in "d:\Projects\SomeProject\src" including sub-folders that match search masks "*.c;*.cpp;*.h;*.hpp;*.inc" and excluding specified folders ".svn;.git" will be processed. Can process unicode and system native...

Gimp# is a C# wrapper around the GIMP API. It also offers a plug-in framework. This enables users to quickly write new GIMP plug-ins using .NET or Mono.

PHPMyExporter is a simple and fast PHP library for database export. It can be used to export any mysql table to a standard csv file after connecting to the database. The headings of the table are automatically included in the exported CSV file.

A CSV mass editor for advanced users, written in PHP. Its purpose is not to edit the data, but to mass manipulate it: re-arrange, join and delete columns, join rows, search and replace using regexes and a bit more.

mp3-trim is a command line bash script replacement for the old unsupported compiled version of mp3-trim. mp3-trim allows you to interactively set cutpoints to trim off garbage from the start and end of mp3 files. Very quick and easy to use.

Mac and Window applications to rename To rename selected files, with features of adding serial number, capitalize, make small, 1st letter capital, Replace, add suffix, add prefix,Replace part of name, Eliminate blanks, Trim name length.....

IntelliJ IDEA Plugin for text manipulation: -Un/Escape Java text -Un/Escape JavaScript text -Un/Escape HTML text -Trim text -Trim all spaces -Remove all spaces -grep -Duplicate line and increment numbers

You can split, cut, trim a large MP3 file into multiple smaller pieces by time.