Search Results for "md" - Page 2
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Showing 83 open source projects for "md"
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GrOWin
Gromacs on Windows
...Discover the next level of MD simulations with Growin opening new possibilities -
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OpenFOAM
The Open Source CFD Toolbox
OpenFOAM - The Open Source CFD Toolbox. OpenFOAM is a generic, programmable software tool for Computational Fluid Dynamics (CFD). For more information, see: - Main Website: https://openfoam.org - C++ Source Documentation: https://cpp.openfoam.org - Issue (Bug) Tracking: https://bugs.openfoam.org - User Guide: https://cfd.direct/openfoam/user-guide -
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LynxPrompt
Self-hostable platform for managing AI IDE configuration files
Self-hostable platform for managing AI IDE configuration files. Supports 30+ AI coding assistants including Cursor, Claude Code, GitHub Copilot, Windsurf, and more. Write once, export to any AI tool format. Features a blueprint marketplace, interactive wizard, CLI tool, and configurable authentication. -
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Neiki's Markdown Editor
Live Markdown editor with real-time GitHub-styled preview
...Built with vanilla JavaScript and CDN-based dependencies, it requires zero setup or build tools. The editor includes a modern toolbar, keyboard shortcuts, dark/light theme switching, export to .md, and mobile-friendly interface. It is designed for simplicity, performance, and safe rendering with built-in XSS protection. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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http://loto.sourceforge.net/ hosts 4 projects of free software related to materials science and physics. They are loto, feram, compasses and xtalgrowth.
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Kernel Build From RainyLand
Provide some open build for some devices.
...We will try to support it in the future # Device request - Go to `.github` repo - Create an issue - Issue header: `[DEVICE REQUEST] <device codename> - <device manufacture> <device fullname>` - Example issue body ```md # Device Infomation (Paste GSMarena link) https://www.gsmarena.com/xiaomi_redmi_note_12_pro-11955.php # Kernel source (Provide your kernel source) https://github.com/kernel-build-from-rainyland/kernel_xiaomi_ruby # Wanted build type (vanilla / sukisu / ksun / ksu. If you have different fork, paste the link here) ksun # Do you want susfs? ... -
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This module integrates elFinder (https://github.com/Studio-42/elFinder) file manager with Drupal CMS.
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Testing Files Generator
Test file generator for QA. Creates real PDF, PNG, ZIP, DOCX and more
Testing Files Generator is a tool for QA engineers and developers who need real files to test against - an upload form, a parser, anything that takes a file and has an opinion about it. You pick one of its 26 formats and the size you want, and you get exactly that: ask for a 10 MB PDF and you get a PDF that a reader will open, at 10 MB to the byte. GUI + CLI You are testing software that accepts files from people. Sooner or later you need: - a PDF of exactly 10 MB, to find out... -
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DocWire SDK
Award-winning modern data processing SDK in C++20
DocWire SDK, a standout C++20AI driven data processing tool, has received award from SourceForge and strong backing from Microsoft. It handles nearly 100 file types, empowering efficient text extraction, web data extraction, and document analysis. For businesses, the shift to DocWire SDK signifies a leap forward. It promises comprehensive document format support and the ability to extract valuable insights from email boxes, databases, and websites using cutting-edge AI. DocWire SDK aims to... -
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CAMPARI
Software for molecular simulations and trajectory analysis
We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and... -
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Gloria
Gloria is a static website generator, based on NodeJS
...We're also slowly moving into typescript, and while I think it should work very well for your projects, legally I need to remind you that this is a satire of other projects. It currently supports having a content management system using MD files and tailwind CSS, with some bugs, but the main functionality and philosophy have been accomplished. This project aims to be a substitute for Jekyll, to help you create static websites without depending on Ruby. Because of its ease of use, extensibility, and support for md files, is also great for creating websites out of documentation that lives in a source code. -
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backslide
CLI tool for making HTML presentations with Remark.js using Markdown
...Use bs serve to start a development server with live reload. A page will automatically open in your web browser showing all your presentations. Select one to see the preview, you can then edit your .md file and see the changes immediately as you save the file. Any style change will also be applied live. Slides are written in Markdown, along with some useful Remark.js specific additions. See the Remark.js wiki for the specific syntax and helpers. -
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medium-2-md
A CLI tool that converts exported Medium posts (html) to Jekyll/Hugo
A CLI tool that converts medium posts (html) into Jekyll/Hugo compatible markdown files. Also downloads images and adds yaml front matter to the converted markdown files. It works with exported Medium posts (local html files) and converts them to markdown using a single command. It can be useful in scenarios when you want to migrate your blog away from Medium to Jekyll or Hugo (or something similar that supports markdown content). -
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Krajee bootstrap-star-rating
A simple yet powerful JQuery star rating plugin with fractional rating
...The plugin uses Bootstrap markup and styling by default, but it can be overridden with any other CSS markup. Ability to size the rating control to any size including the stars, caption, and clear button. Five prebuilt size templates are available xl, lg, md, sm, and xs. However one can have their own size configured through a simple CSS manipulation. You can use the HTML 5 number input for polyfill and the plugin will automatically use the number attributes like min, max, and step. However, number inputs have a problem with decimal values on the Chrome Browser. Specifically uses Bootstrap 3.x styles & glyphs. ... -
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FUSUMA
Fusuma makes slides with Markdown easily
...Init Mode, for creating a slide, style, configuration file and GitHub actions that deploy slides to gh-pages automatically. Development Mode, for running with HMR, just coding Markdown and sometimes CSS. Build Mode, to render to HTML and optimizing js,css,md. Generating an image of slides as og:image and checking a11y automatically. Presentation Mode, including speaker note, timer, and features for recording your page actions and voice. Deploy Mode, for deploying to GitHub pages. And PDF Mode, for exporting slides as PDF. -
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Linkchecker for Markdown
Python asyncio + aiohttp Markdown *.md URL link checker
Blazing-fast (10000 Markdown files per second) Python asyncio / aiohttp based simple check of links in Markdown .md files only. This tool is very helpful for large Markdown-based Jekyll and Hugo sites as well as Markdown-based MkDocs documentation projects. It is very fast and simple. -
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vscode-data-preview
Extension for importing, viewing, slicing, dicing, and charting JSON
Data Preview extension for importing, viewing, slicing, dicing, charting & exporting large .json array .arrow .avro .parquet data files, .config .env .properties .ini .yml configurations files, .csv/.tsv & .xlsx/.xlsb Excel files and .md markdown tables with Perspective - streaming data analytics WebAssembly library. -
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allmut.sh is a shell script to run MutSigCV and genvisr. ***Update*** The genelist file reports those with p<0.05 only. Now the script incorporates genvisr. hg38 option is added. md (most deleterous) option is added. A script to transform TCGA MAF file is provided.
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readme-md-generator
CLI that generates beautiful README.md files
readme-md-generator is able to read your environment (package.json, git config...) to suggest you default answers during the README.md creation process. Make sure you have npx installed (npx is shipped by default since npm 5.2.0). -
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Objective Function Analysis
An alternative to neural nets for machine learning.
Objective Function Analysis models knowledge as a multi-dimensional probability density function (MD-PDF) of the perceptions and responses (which are themselves perceptions) of an entity and an objective function (OF). The learning algorithm is the action of choosing a response, given the perceptions, which maximizes the objective function. The MD-PDF is initially seeded by a uniform random number generator. The response is used to evaluate the OF and the OF is either reinforced or diminished in the probability subspace formed by the perceptions and responses. ... -
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SAMFF
A Refined Empirical Force Field to Model Protein-SAM Interactions
Understanding protein interaction with material surfaces is important for the development of nanotechnological devices. The structures and dynamics of proteins can be studied via molecular dynamics (MD) if the protein-surface interactions can be accurately modeled. Based on AMBER14 and GAFF, we systematically tuned the Lennard-Jones parameters of selected amino acid sidechains and the functional group of SAM with repeated metadynamics and umbrella sampling simulations. The final parameter set has yielded a significant improvement in the free energy values with R = 0.83 and MSE = 0.65 kcal/mol. ... -
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ForceGen
Derives force constants from Gaussian QM for Gromacs MD
Please cite: ForceGen: atomic covalent bond constant derivation for Gromacs. Nash A, Collier T, Birch HL, de Leeuw NH. Journal of Molecular Modeling (2018), (24)5. DOI: 10.1007/s00894-017-3530-6 Instruction video: https://youtu.be/fQVXv8Ge_tg This Java executable jar derives second order bond force constants for bond stretch and bond angle from quantum mechanical Gaussian calculations. The calculations are compatible with the Amber force field family or any force field derived from... -
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OpenGrowth
OpenGrowth is a program which constructs de novo ligands for proteins.
...OpenGrowthGUI, FOG2.0, and the 3Mer-Screen stand-alone can be found in OpenGrowth_1.0.zip. To prepare new fragments you need BuildingFragments_1.0.1.zip and the scripts for MD simulations are in MD-Scripts_1.0.1.zip. SMoG2016.tar.gz allows to compute a score with the newly developed function (J. Chem. Inf. Mod., http://pubs.acs.org/doi/abs/10.1021/acs.jcim.6b00610). For any questions, please send emails exclusively at opengrowth-discuss@lists.sourceforge.net. -
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