Search Results for "matrix structural analysis" - Page 2
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Showing 110 open source projects for "matrix structural analysis"
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CiteSpace
A widely used tool for visual exploration of scientific literature.
Visit the new site: https://citespace.podia.com CiteSpace generates interactive visualizations of structural and temporal patterns and trends of a scientific field. It facilitates a systematic review of a knowledge domain through an in-depth visual analytic process. It can process citation data from popular sources such as the Web of Science, Scopus, Dimensions, and the Lens. CiteSpace also supports basic visual analytic functions for datasets without citation-related information, for... -
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MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. * More info + downloads: https://mlpack.org * Git repo: https://github.com/mlpack/mlpack
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Frame3DD
Static and Dynamic Structural Analysis of 2D and 3D frames.
FRAME3DD is a program for the static and dynamic structural analysis of two- and three-dimensional frames and trusses with elastic and geometric stiffness. -
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nligaStruct
Isogeometric structural analysis with Bézier extraction
nligaStruct is an extension of NLIGA in aspect of isogeometric structural analysis. A framework for Bézier extraction of T-spline and NURBS is embedded in the simulation pipeline. Both Reissner-Mindlin and Kirchhoff-Love assumptions are considered in the case of static bending and free vibration analysis of thin-walled structures (plates and shells). The convergence behaviors of these two assumptions for both plate and shell are thoroughly studied and compared. ... -
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Pysces
PySCeS is the Python Simulator of Cellular Systems
PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis. -
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DiPoly
Diffraction analysis of Polymers
DiPoly is a new software that implements basic diffraction methods for the structural characterization of biopolymers. It is freeware with a friendly interface for the analysis of experimental powder X-ray diffractograms of polymer samples of biomass of various origins. A complex approach approach based on a combination of the Segal, decomposition and LeBale methods is used to estimate the degree of crystallinity. -
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DockStream
A Docking Wrapper to Enhance De Novo Molecular Design
DockStream is a docking wrapper providing access to a collection of ligand embedders and docking backends. Docking execution and post hoc analysis can be automated via the benchmarking and analysis workflow. The flexilibity to specifiy a large variety of docking configurations allows tailored protocols for diverse end applications. DockStream can also parallelize docking across CPU cores, increasing throughput. DockStream is integrated with the de novo design platform, REINVENT, allowing one to incorporate docking into the generative process, thus providing the agent with 3D structural information. -
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Colin
Civil Engineering structural analysis application.
Colin is a structural analysis application with a lightweight interface. This structural analysis software for students, in order to provide an easier way to learn the basics of civil engineering. -
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Davinci
Davinci is a DVsaaS (Data Visualization as a Service) Platform
Davinci is oriented towards product managers, business people, data engineers, data analysts, data scientists, etc. It aims to provide a one-stop data visualization solution, which could be both independently used as a public cloud/private cloud and integrated into third-party systems as plugin. A simple configuration on Davinci UI can meet multiple visualization requirements. It also supports other visualization features like advanced interaction, industry analysis, pattern searching,... -
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Frontend Regression Validator (FRED)
Visual regression tool used to compare baseline and updated instances
...FRED is responsible for automatic visual regression testing, with the purpose of ensuring that functionality is not broken by comparing a current(baseline) and an updated version of a website. The visual analysis computes the Normalized Mean Squared error and the Structural Similarity Index on the screenshots of the baseline and updated sites, while the visual AI looks at layout and content changes independently by applying image segmentation Machine Learning techniques to recognize high-level text and image visual structures. This reduces the impact of dynamic content yielding false positives. ... -
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2D Structural Analysis
Determine the bending moments, shear forces, axial forces and displace
2D Structural Analysis in Python by Ritchie Vink A collection examples of 2D Finite Element Analysis (FEA) made with Jupyter Notebook Lab - https://jupyter.org/ To install Jupyter - https://jupyter.org/install ===== App is available on Play Store -> https://play.google.com/store/apps/details?id=com.ulm.struct If you want to download a python editor for your android smartphone follow this link -> https://play.google.com/store/apps/details? -
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SVPhylA
SVPhylA: Sequence Vectorization for Phylogenetic Analyses
SVPhylA is a python tool for the calculation of several alignment-free distances for phylogenetics analysis from the most popular alignment-free approaches. Such alignment-free methods basically encode DNA and protein sequences (fasta files) into numerical vectors allowing the calculation of alignment-free distances which may be combined into a consensus/compromise matrix by using algorithms like DISTATIS based on Multidimensional Scaling (MSD), Lineal Principal Component Analysis (PCA) and PCA-Kernel (non-lineal). ... -
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Sensitizer
A toolset to automate STOP analysis with Zemax OpticStudio
SENSITIZER is an ESO software toolset written in Matlab and Mathematica aiming at automating some Structural/Thermal/Optical Performance (STOP) sensitivity analyses with Zemax OpticStudio (ZOS). The core code of SENSITIZER runs in MATLAB and drives ZOS in the background through the ZOS-API interface, based on .NET. The output is saved in the MATLAB file format and can be post-processed using MATLAB and/or Mathematica routines. The optical system to analyze is defined in a normal Zemax lens... -
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GDINA Package for Cognitively Diagnostic
Package for Cognitively Diagnostic Analyses
...Modelling independent, saturated, higher-order, loglinear smoothed, and structured joint attribute distribution. Accommodating multiple-group model analysis. Imposing monotonic constrained success probabilities. Accommodating binary and polytomous attributes. -
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Batch PIE
A batch pipelined image editor
Current filter functionality: - Simple editing options: Image cropping, resizing, rotation, Color brightness curve alignment - Histobram processing: Convolution, statistics (e. g. f_max or median analysis) - Image segmentation: The actual segmentation process as well as group weight calculation for further filtering (both functions rely on self defined custom dynamic mathematical functions) - Dynamic mathematical functions for custom and automated image filtering: General mathematical operations, using image or matrix as f(x, y), export f(x, y) as image or matrix, mapping variables on other ones and of course boolean operation for case sensitivity - A flexible variables model of dynamic mathematical function that sets no restriction on particular variables count - Sub project support for an organized total process targeting to save time using previously created editing routines instead of redoing steps each time -
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Fuzzy Ecospace Modelling
FEM allows users to create fuzzy functional groups for use in ecology.
Fuzzy Ecospace Modelling (FEM) is an R-based program for quantifying and comparing functional disparity, using a fuzzy set theory-based machine learning approach. FEM clusters n-dimensional matrices of functional traits (ecospace matrices – here called the Training Matrix) into functional groups and converts them into fuzzy functional groups using fuzzy discriminant analysis (Lin and Chen 2004 – see main text for more information). Following this, FEM classifies the functional entities from a second matrix (the Test Matrix) into the groups made using the Training Matrix, generating fuzzy membership values for each unit in the Test Matrix. ... -
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Phusion2
The genome assembly pipeline based on read clustering
Phusion2 is a pipeline for de novo genome assembly using NGS data. It is based upon a strategy called read clustering. Starting with kmer frequency analysis, this allows for a reasonable selection of the kmer sizes. K-tuples from raw reads are merged and sorted into a table so that multiple occurring kmer words shared by different reads can be linked. A relation matrix is used to record the shared kmer words among all the reads. Setting a minimum threshold of shared k-tuples, the whole set of reads can then be clustered into groups using kmer sharing information in the relational matrix. ... -
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hppRNA
A Snakemake-based handy parameter-free pipeline for RNA-Seq analysis
hppRNA package is dedicated to the RNA-Seq analysis for a large number of samples simultaneously from the very beginning to the very end, which is formulated in Snakemake pipeline management system. It starts from fastq files and will produce gene/isoform expression matrix, differentially-expressed-genes, sample clusters as well as detection of SNP and fusion genes by combination of the state-of-the-art software. -
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inGAP-family provides an efficient and effective framework to discover, filter and visualize DNA polymorphisms and structural variants from alignment of short reads. Applying this method on polymorphism detection on real datasets shows that elimination of artificial variants greatly facilitates the precise identification of meiotic recombination points, recognizing causal mutations in mutant genomes or QTL loci. In addition, inGAP-family provides user-friendly graphical interface for...
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Scikit-plot
An intuitive library to add plotting functionality to scikit-learn
Single line functions for detailed visualizations. Scikit-plot is the result of an unartistic data scientist's dreadful realization that visualization is one of the most crucial components in the data science process, not just a mere afterthought. Gaining insights is simply a lot easier when you're looking at a colored heatmap of a confusion matrix complete with class labels rather than a single-line dump of numbers enclosed in brackets. Besides, if you ever need to present your results to... -
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BioNet-Finder
Network-based modeling and analysis for complex biological data
BioNet-Finder is a network-based genomic data modeling project, supported by the Multivariate Statistics lab of the Brain and Behavioural Science Department at University of Pavia (Pavia, Italy), to share data, methods, and code for network-based analysis of complex disorders. Our goal is to provide straightforward tools for data reduction, modeling, and interpretation, avoiding common issues, including data selection, database compositional biases, topological/hierarchical organization of data, genomic complexity, latent effects on the observed system, and output ranking. This is carried out applying network analysis methods from different fields, such as Structural Equation Modeling (SEM), together with data reduction algorithms (e.g., random walkers, spectral analysis, shortest path-based or topology-based algorithms). ... -
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Clustergrammer
An interactive heatmap visualization built using D3.js
Clustergrammer is a visualization library built using D3.js that enables intuitive interaction with high-dimensional data. Clustergrammer was built with biological data in mind. Clustergrammer is a web-based tool for visualizing high-dimensional data (e.g. a matrix) as an interactive and shareable hierarchically clustered heatmap. Clustergrammer's front end (Clustergrammer-JS) is built using D3.js and its back-end (Clustergrammer-PY) is built using Python. Clustergrammer produces highly interactive visualizations that enable intuitive exploration of high-dimensional data and has several biology-specific features (e.g. enrichment analysis, see Biology-Specific Features) to facilitate the exploration of gene-level biological data. -
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GeoJAGS
JAGS module with covariance functions and the CAR model.
A module for JAGS containing several covariance functions for point-referenced data analysis and a function that creates the precision matrix for the proper CAR model for areal data analysis. -
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I.S.A.A.C.S. Interactive Structure Analysis of Amorphous and Crystalline Systems is a cross-platform software developed to analyze the structural characteristics of three-dimensional models built by computer simulations.
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This is the home of the P06PymfGUI, a GUI for the analysis of XRF imaging data with the Python Matrix Factorisation Module (code.google.com/p/pymf/). There are Source Code, Windows Executable (64-bit) and a manual in pdf form.
