Search Results for "ctext alignment interface" - Page 2

Showing 50 open source projects for "ctext alignment interface"

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  • 1
    MLDSP-GUI
    An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
    Downloads: 0 This Week
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  • 2

    seqdiva

    SeqDivA:Sequence Diversity Analysis

    Sequence Diversity Analysis - SeqDivA version 1.0 is a python-based tool with a friendly GUI designed for Linux and Mac OS. Utility: Run alignment algorithms (water, needle, and blast) to compare all-vs.-all protein, DNA, and RNA sequences. SeqDivA provides similarity, identity, and bit-score matrixes and dot plots to explore/illustrate the diversity (homology degree) of the sequences, enabling the delimitation of the twilight zone. Installation: - Download SeqDivA - decompress the “.zip or tar.gz” file - Load the graphical interface by executing python SeqDivA.py. ...
    Downloads: 0 This Week
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  • 3
    M80AttributedLabel

    M80AttributedLabel

    Another attributed label using CoreText

    M80AttributedLabel is a feature-rich UILabel alternative that supports rich text rendering with advanced formatting options. It allows embedding links, images, and custom text styling within a label, supporting complex layouts.
    Downloads: 0 This Week
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  • 4
    Java Text Table Formatter is a Java library that renders tables made of characters. The user add cells and can add format characteristics like predefined/custom table styles, text alignment, abbreviation, column width, border types, colspan, etc.
    Downloads: 1 This Week
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  • 5
    inGAP-family
    inGAP-family provides an efficient and effective framework to discover, filter and visualize DNA polymorphisms and structural variants from alignment of short reads. Applying this method on polymorphism detection on real datasets shows that elimination of artificial variants greatly facilitates the precise identification of meiotic recombination points, recognizing causal mutations in mutant genomes or QTL loci. In addition, inGAP-family provides user-friendly graphical interface for detection of polymorphisms and structural variants, and for further evaluation of predicted variants and identification of mutations related to genotypes. ...
    Downloads: 0 This Week
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  • 6

    arkwrt

    A CLI tool for concepts defined in the ArchiMate® 2.1 specification

    Arkwrt is a CLI (command-line interface) tool that provides a partial implementation of the ArchiMate® 2.1 Specification (ISBN: 978-94-018-0003-7). Arkwrt's creation was inspired by the The UNIX® philosophy that emphasizes building simple, short, clear, modular, and extensible code, that can be easily maintained and re-purposed by developers other than its creators.
    Downloads: 0 This Week
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  • 7

    The Lean Mean C++ Option Parser

    A no-dependencies C++ program arguments parser

    The Lean Mean C++ Option Parser handles the program arguments (argc, argv). It supports the short and long option formats of getopt(), getopt_long() and getopt_long_only() but has a more convenient interface. It is a freestanding, header-only library with no dependencies, not even libc or STL. It comes with a usage message formatter that supports column alignment and line wrapping, making it ideal for localized messages with different lengths.
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    Downloads: 4 This Week
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  • 8
    Gallop

    Gallop

    A framework for build smooth asynchronous iOS APP

    ...It encapsulates CoreText's rich text functions and commonly used image processing capabilities. just need use LWTextStorage object instead of UILabel object and use LWImageStorage object instead of UIImageView object,Gallop will make sure your app scroll smoothly. You can also use Gallop to parse HTML pages and customize machining to parse HTML pages into iOS native pages. Use Gallop Building complex rich text interface application, can get a great experience. You can easy to insert local images,web images or UIView object in the text. Easily add click and long press events to the text. Easily draw text frame bouding, drawing the hollow words, sets the text vertical Alignment property, etc Easy to parse the expression in the text, like http(s) link, @ user, # theme #, phone number. ...
    Downloads: 1 This Week
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  • 9

    Faligner

    Faligner: a Local Sequence Alignment Ubuntu Package

    A package based on 3 local alignment tools i.e., Bowtie, Bowtie2 and BWA. Package covers single-end, paired-end alignments. Moreover, the package also demonstrates overlap alignment and colorspace alignment features. The package also includes graphical user interface to make it interactive.
    Downloads: 0 This Week
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  • 10
    logmap-matcher

    logmap-matcher

    LogMap: An Ontology Alignment and Alignment Repair System

    LogMap is a highly scalable ontology matching system with ‘built-in’ reasoning and inconsistency repair capabilities. LogMap extract mappings between classes, properties and instances. To the best of our knowledge, LogMap is one of the few matching systems that: 1. can efficiently match semantically rich ontologies containing tens (and even hundreds) of thousands of classes, 2. incorporates sophisticated reasoning and repair techniques to minimise the number of logical...
    Downloads: 0 This Week
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  • 11
    MeSeq is a package providing ease in installing some popular Multiple Sequence Alignment Tools. It also provides a GUI interface for the tools.
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  • 12
    LociMapViz - multi loci visualization
    Software for visualization of point variability in pairwise sequence alignment FASTA format. Featuring GUI interface, this simple application enables insight into variation of nucleic and amino acids on specific loci. Current 1.1 version supports amino and nucleic acid alignments. There are 2 variations of this software. One is CLI based and the other one is GUI based. Read corresponding README files in order to get familiar with the software.
    Downloads: 0 This Week
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  • 13
    iMet-Q (intelligent Metabolomic Quantitation) is an automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. It has a complete quantitation procedure for noise removal, peak detection and peak alignment. In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv...
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  • 14
    ...For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. The command line tools of Hadoop-BAM should be understandable to all users, but they are limited in scope. See the SeqPig project for a higher-level interface to the file formats supported by Hadoop-BAM: http://seqpig.sourceforge.net See Seal for Hadoop-based read alignment tools, Seal: http://biodoop-seal.sourceforge.net
    Downloads: 1 This Week
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  • 15
    SpeedRead

    SpeedRead

    A simple terminal-based open source Spritz-alike

    speedread is a terminal-based Spritz-style speed-reading tool that displays text word-by-word to help users read quickly while maintaining comprehension. Inspired by the original Spritz reader, speedread shows one word at a time with alignment to the optimal recognition point (ORP), allowing users to consume content faster than traditional reading methods.
    Downloads: 1 This Week
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  • 16

    OnAGUI - Ontology Alignment GUI

    Software to help automatic or manual realisation of ontologi alignment

    This project has moved to https://github.com/lmazuel/onagui - OnAGUI (Ontology Alignment Graphical User Interface) is a project of alignment helper and viewer. You can edit ontology (SKOS, OWL) and edit alignment between concept of these ontologies. In addition, you can make automatic discovery of alignment, using different kind of algorithm. This work was initiated by Jean Charlet (http://www.limics.fr/index.php/annuaire), designed and developped by Laurent Mazuel on a post-doctoral project. ...
    Downloads: 1 This Week
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  • 17

    Java Wizard Development Framework

    Reduced SWING coding. New UI components. Easy layout management.

    About: 1) Projects helps Java - SWING developers to develop UI forms very faster. 2) API contains reusable Components & Layouts that developers can directly use in their projects. 3) Just include project JAR file in your existing project then import and use all features (refer JavaWizardDevelopmentDocumentation) * Don't worry about Java's complex layouts, just pass your components as parameters to our "MyLayout" class and we'll do it for you. * New & pre-aligned UI components like...
    Downloads: 0 This Week
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  • 18
    COV2HTML

    COV2HTML

    A visualization and analysis tool of Bacterial NGS data for Biologists

    COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria.
    Downloads: 0 This Week
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  • 19
    PlaTypUS

    PlaTypUS

    Plasmodium Typing Utility Software

    The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.
    Downloads: 0 This Week
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  • 20
    Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.
    Downloads: 0 This Week
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  • 21
    JFinisher

    JFinisher

    JFinisher is software for alignment, editing and manipulation DNA seqs

    JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences.
    Downloads: 0 This Week
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  • 22
    MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.
    Downloads: 0 This Week
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  • 23
    Sanchay
    Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.
    Downloads: 0 This Week
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  • 24
    ZAE is a Zoomable multiple sequence Alignment Editor
    Downloads: 0 This Week
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  • 25
    jsoop (Javascript Object Oriented Programming) is a cross-browser javascript component library targeting Microsoft Internet Explorer and Mozilla. It's inheritance tree includes basic HTML components, alignment, serialization, fieldbinding, xml, xmlhttp
    Downloads: 0 This Week
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