Search Results for "yeast"

The shape programs provide a suite of tools to define large three dimensional scenes. The main idea is to give vertices in a way easily measured or imagined, and to let the code take care for the rest. Thus vertices are defined relative to each other, by distances or linearly.

yeastnet is a community-driven reconstruction of the yeast metabolic network. It has permanently moved to https://github.com/SysBioChalmers/yeast-GEM

...MACExo has the following four steps: 1) sequencing data normalization and bias correction; 2) signal consolidation and noise reduction; 3) single nucleotide resolution border detection using Chebyshev Inequality; and 4) border matching using Gale-Shapley’s stable matching algorithm. When applied to yeast Reb1 and human CTCF ChIP-exo data, MACE is able to define TFBSs with higher sensitivity, specificity and spatial resolution, as evidenced by multiple criteria, such as motif enrichment, sequence conservation, nucleosome positioning, and open chromatin states.

The active use repository has migrated over to: https://github.com/darrenabbey/ymap The repository here was errantly created with some large binary files included. Attempts to extract the files from the history here have failed. A copy of the history was successfully scrubbed and then hosted at github. -------- Eukaryotic pathogens have complicated and dynamic genomes. To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of...

A package of programs for analysis of meiosis in yeast.

Yeast Associations Network Explorer

Yeast Image Analysis

Yeas Cell Calculator is an aid for a hemocytometer in the determination of how much yeast is in a slurry.

...The proposed framework handles genome compression with and without reference seque- nces, and demonstrated performance advantage over the best existing algorithms. The proposed method without a reference led to bit rates of 1.720 and 1.838 bits per base for bacteria and yeast, which are approximately 3.7% and 2.6% better than the state-of-the-art algorithm. Regarding performance with reference, we tested on the first Korean personal genome sequence data set, and the proposed method demonstrated a 189-fold compression rate, reducing the raw file size from 2986.8 MB to 15.8 MB.

GeneNetWeaver (GNW) is an open-source tool for in silico benchmark generation and performance profiling of network inference methods. GNW was used to generate the community-wide DREAM3, DREAM4 and DREAM5 In Silico Challenges.

This project is used to predict Genetic Interactions from poly peptide of yeast proteins.

pISTil (a Pipeline for Interaction Sequence Tag identification and analysis) is a collection of scripts, and programs - running on both Linux and MacOS X systems - for fast analysis of large yeast two-hybrid sequence datasets.

Gnu Mash is the right tool for homebrewer. Will be ProMash recipe compatible, multilenguage, and easy to use. A large database of ingredient (malt, yeast, hope, spice, etc.).