Search Results for "sequence ontology"

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Showing 4 open source projects for "sequence ontology"

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  • 1

    Taxoblast

    Taxoblast is a pipeline to identify contamination in genomic sequence

    ... for the entire scaffold, taking into account the taxonomic ontology. Scaffolds that exclusively match potential contaminants may be safely removed while sequences matching partially contaminants and partially the target organism may constitute horizontal transfers or assembly artifacts and need to be examined manually.
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  • 2
    Make it SO. This aim of this project is to develop both an ontology and a set of software modules to be used to describe and communicate biological sequence information.
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  • 3
    mx is a Ruby/Rails code base with broad application in evolutionary biology, it includes general functionality for matrix handling, sequence management, ontology construction, specimen handling, taxonomic catalogs, taxonomic descriptions and more
    Downloads: 0 This Week
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  • 4
    danaides

    danaides

    Meta data extractor based on ontologies

    Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).
    Downloads: 0 This Week
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