Search Results for "probabilistic boolean networks python"
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Showing 14 open source projects for "probabilistic boolean networks python"
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YARA
The pattern matching swiss knife for malware researchers
...With YARA you can create descriptions of malware families (or whatever you want to describe) based on textual or binary patterns. Each description, a.k.a rule, consists of a set of strings and a boolean expression which determines its logic. YARA is multi-platform, running on Windows, Linux and Mac OS X, and can be used through its command-line interface or from your own Python scripts with the yara-python extension. YARA-CI may be a useful addition to your toolbelt. This is GitHub application that provides continuous testing for your rules, helping you to identify common mistakes and false positives. ... -
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PRML
PRML algorithms implemented in Python
PRML repository is a respected and well-maintained project that implements the foundational algorithms from the famous textbook Pattern Recognition and Machine Learning by Christopher M. Bishop, providing a practical and accessible Python reference for both students and professionals. Rather than just summarizing concepts, the repository includes working code that demonstrates linear regression and classification, kernel methods, neural networks, graphical models, mixture models with EM... -
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Darts
A python library for easy manipulation and forecasting of time series
...Darts supports both univariate and multivariate time series and models. The ML-based models can be trained on potentially large datasets containing multiple time series, and some of the models offer a rich support for probabilistic forecasting. We recommend to first setup a clean Python environment for your project with at least Python 3.7 using your favorite tool (conda, venv, virtualenv with or without virtualenvwrapper). -
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Google DeepMind GraphCast and GenCast
Global weather forecasting model using graph neural networks and JAX
GraphCast, developed by Google DeepMind, is a research-grade weather forecasting framework that employs graph neural networks (GNNs) to generate medium-range global weather predictions. The repository provides complete example code for running and training both GraphCast and GenCast, two models introduced in DeepMind’s research papers. GraphCast is designed to perform high-resolution atmospheric simulations using the ERA5 dataset from ECMWF, while GenCast extends the approach with... -
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NeuralForecast
Scalable and user friendly neural forecasting algorithms.
NeuralForecast offers a large collection of neural forecasting models focusing on their performance, usability, and robustness. The models range from classic networks like RNNs to the latest transformers: MLP, LSTM, GRU, RNN, TCN, TimesNet, BiTCN, DeepAR, NBEATS, NBEATSx, NHITS, TiDE, DeepNPTS, TSMixer, TSMixerx, MLPMultivariate, DLinear, NLinear, TFT, Informer, AutoFormer, FedFormer, PatchTST, iTransformer, StemGNN, and TimeLLM. There is a shared belief in Neural forecasting methods'... -
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pomegranate
Fast, flexible and easy to use probabilistic modelling in Python
pomegranate is a library for probabilistic modeling defined by its modular implementation and treatment of all models as the probability distributions they are. The modular implementation allows one to easily drop normal distributions into a mixture model to create a Gaussian mixture model just as easily as dropping a gamma and a Poisson distribution into a mixture model to create a heterogeneous mixture. But that's not all! Because each model is treated as a probability distribution,... -
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MMGeneration
MMGeneration is a powerful toolkit for generative models
MMGeneration has been merged in MMEditing. And we have supported new-generation tasks and models. MMGeneration is a powerful toolkit for generative models, especially for GANs now. It is based on PyTorch and MMCV. The master branch works with PyTorch 1.5+. We currently support training on Unconditional GANs, Internal GANs, and Image Translation Models. Support for conditional models will come soon. A plentiful toolkit containing multiple applications in GANs is provided to users. GAN... -
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Pattern Recognition and Machine Learning
Repository of notes, code and notebooks in Python
...Each section of the repository corresponds to chapters in the book and includes code examples that demonstrate statistical modeling, machine learning methods, and Bayesian inference techniques. These notebooks provide visualizations and computational demonstrations that help clarify complex topics such as probabilistic models, neural networks, kernel methods, and graphical models. The repository also includes implementations of sampling methods, clustering algorithms, and dimensionality reduction techniques used throughout machine learning research. -
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DeepLearning
Deep Learning (Flower Book) mathematical derivation
" Deep Learning " is the only comprehensive book in the field of deep learning. The full name is also called the Deep Learning AI Bible (Deep Learning) . It is edited by three world-renowned experts, Ian Goodfellow, Yoshua Bengio, and Aaron Courville. Includes linear algebra, probability theory, information theory, numerical optimization, and related content in machine learning. At the same time, it also introduces deep learning techniques used by practitioners in the industry, including... -
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Deep Learning Drizzle
Drench yourself in Deep Learning, Reinforcement Learning
Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures! Optimization courses which form the foundation for ML, DL, RL. Computer Vision courses which are DL & ML heavy. Speech recognition courses which are DL heavy. Structured Courses on Geometric, Graph Neural Networks. Section on Autonomous Vehicles. Section on Computer Graphics with ML/DL focus. -
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GSMLBook
Recipes for basic machine learning algorithms using sklearn in jupyter
This is an introductory book in machine learning with a hands on approach. It uses Python 3 and Jupyter notebooks for all applications. The emphasis is primarily on learning to use existing libraries such as Scikit-Learn with easy recipes and existing data files that can found on-line. Topics include linear, multilinear, polynomial, stepwise, lasso, ridge, and logistic regression; ROC curves and measures of binary classification; nonlinear regression (including an introduction to gradient descent); classification and regression trees; random forests; neural networks; probabilistic methods (KNN, naive Bayes', QDA, LDA); dimensionality reduction with PCA; support vector machines; and clustering with K-Means, hierarchical, and DBScan. ... -
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Edward
A probabilistic programming language in TensorFlow
A library for probabilistic modeling, inference, and criticism. Edward is a Python library for probabilistic modeling, inference, and criticism. It is a testbed for fast experimentation and research with probabilistic models, ranging from classical hierarchical models on small data sets to complex deep probabilistic models on large data sets. Edward fuses three fields, Bayesian statistics and machine learning, deep learning, and probabilistic programming. Edward is built on TensorFlow. It... -
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PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks. Homepage has migrated to https://github.com/hklarner/PyBoolNet This page is only maintained to keep links alive.
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optPBN
An optimization toolbox for probabilistic Boolean networks
We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. ...
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