Search Results for "nuclear data"
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Showing 29 open source projects for "nuclear data"
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Convex.jl
A Julia package for disciplined convex programming
Convex.jl is a Julia package for Disciplined Convex Programming (DCP). Convex.jl makes it easy to describe optimization problems in a natural, mathematical syntax, and to solve those problems using a variety of different (commercial and open-source) solvers. Convex.jl works by transforming the problem—which possibly has nonsmooth, nonlinear constructions like the nuclear norm, the log determinant, and so forth—into a linear optimization problem subject to conic constraints. This... -
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nmrshiftdb2 is a NMR database (web database) for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. The nmrshiftdb2 software is open source, the data is published under an open content license. The core of nmrshitdb2 are fully assigned spectra with raw data and peak lists (we have pure peak lists as well).
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GeneMiner2 is a comprehensive toolkit designed for phylogenomic genomics. Its main functionalities include: - Mining single-copy nuclear genes, plastid genes/genomes, and other molecular markers from next-generation sequencing data. - Aligning and trimming multiple molecular markers, constructing concatenated and coalescent-based phylogenetic trees, and calibrating tree time. Reference for GeneMiner2: Yu XY, Tang ZZ, Zhang Z, Song YX, He H, Shi Y, Hou JQ, Yu Y. 2026. ...
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ProxSDP.jl
Semidefinite programming optimization solver
ProxSDP is an open-source semidefinite programming (SDP) solver based on the paper "Exploiting Low-Rank Structure in Semidefinite Programming by Approximate Operator Splitting". The main advantage of ProxSDP over other state-of-the-art solvers is the ability to exploit the low-rank structure inherent to several SDP problems. -
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SpecTcl is a Tcl/Tk based histogrammer suitable for analysis of nuclear physics data. SpecTcl is relatively easy to learn, and is based on top of a very open C++ histogramming class framework. SpecTcl has been developed under NSF grant PHY-9528844 and DOE grant DE-SC0000661 Note that as of July 2023, all future development and release packages will be occur at https://github.com/FRIBDAQ/SpecTcl
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AGLAEMap
Read EDF File / view mapping
The proper way to quote AGLAEMap is: Programs for visualization, handling and quantification of PIXE maps at the AGLAE facility L. Pichon, T. Calligaro, Q. Lemasson, B. Moignard, C. Pacheco Nuclear Instruments and Methods in Physics Research Section B, Volume 363, 15 November 2015, Pages 48-54 doi:10.1016/j.nimb.2015.08.086 Due to the copyright transfer to the publisher, the online availability of the article will depend on your subscription to ScienceDirect. The abstract should be available in any case. This software read Esrf Data Format (EDF) files It has been developed to handle on a large number of detectors and series of maps. ... -
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The NSCL Data Acquisition system is a general purpose nuclear physics data acquisition system in use at several university labs and, of course, the National Superconducting Cyclotron Laboratory at Michigan State University. The development of the NSCLDAQ is currently funded by DOE grant DE-SC0000661 Note that as of July, 2023 all development and release packages will be hosted at https://github.com/FRIBDAQ/NSCLDAQ
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VMS Draw
user-friendly access to the latest computational spectroscopy tools
VMS Draw provides general utilities (e.g. normalization, conversion, and other manipulations of several spectra at the same time) and a flexible graphical user interface (GUI) for an easy use by non-specialists which allows a seamless flow of information between experimentally and theoretically oriented researchers. Finally, it permits effective interactions with other electronic structure codes [e.g., nuclear magnetic resonance (NMR), microwave] even if Gaussian 16 offers the widest set... -
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Jam--Nuclear Physics Data Acquisition
Java-based nuclear physics data acquisition.
This project now lives at https://github.com/dwvisser/jam-daq-code/ Jam is an easy-to-use self-contained data acquisition and analysis system for VME-based (or CAMAC-based) nuclear physics experiments. Jam has an easy, standard GUI for taking and sorting multi-parameter event-based data into 1-d and 2-d histograms. -
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DoseInHumanBody
Patient dose from medical X-ray and other sources
...INTERFACE is a small program to compute the correction to dosimeter reading when used in conditions other than the calibration ones. This package does not contain all data required to run, i.e. does not contain GEANT4 libraries and GEANT4 nuclear data (for saving space). It does contain however the X-Ray spectrum data. Read README.txt me inside Build folder for how to fix it. Source code included. Also, available on GitHub: https://github.com/ZiliasTheSaint/DoseInHumanBody.git -
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NNC
Nuclear Norm Clustering
We present Nuclear Norm Clustering (NNC), an algorithm that can be used in different fields as a promising alternative to the k-means clustering method, and that is less sensitive to outliers. The NNC algorithm requires users to provide a data matrix M and a desired number of cluster K. We employed simulate annealing techniques to choose an optimal L that minimizes NN(L). -
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ATOMKI Common Data Acquisition
Nuclear physics data acquisition system
Nuclear physics data acquisition system. The suit of applications can be used to collect data from physics experiments using CAMAC/CAEN/VME devices. The system is quite specialized, but the code can still be useful for others doing something similar... -
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Census2Ged
Converts the US censuses between 1880-1910 to gedcom format
If you transcribe your censuses using Genscriber, you can use Census2Ged to convert your csv files to gedcoms. Census2Ged is the only software that attempts to preserve as much of the original data as possible, while also preserving nuclear family relationships. Alternatively, you could edit your existing excel files to match the headings that Genscriber gives. Make sure you copy them exactly The final file is saved in the folder you installed Census2Ged in. I will probably change this in future versions so you can choose where it is saved. ... -
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fairy
flexible analysis of irradiation yields in nucelar spectroscopy
This program is for easy, fast and intuitive visualization and analysis of nuclear spectroscopic data. The program's functionality can be extended with plugins. -
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Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, biochemistry, or related areas
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Pathway-PDT
Pathway-PDT: A Flexible Pathway Analysis Tool for Nuclear Families
Pathway analysis based on Genome-Wide Association Study (GWAS) data has become popular as a secondary analysis strategy. Although many pathway analysis tools have been developed for case-control study, there is no tool that can use all information from raw genotypes in general nuclear families. We developed the Pathway-PDT, which uses the framework of Pedigree Disequilibrium Test (PDT) for general family data, to perform pathway analysis. -
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...Alongside this, presenting also a graphical representation of the phenomena to the students, they gain a better intuitive understanding of the science that is hidden at the first glance in the usual representation of data - the abstracted plots. In this paper, we present EduKit a software environment based on ROOT framework intended for helping the students learn about the interested nuclear phenomena in a dynamical and graphical interaction. The main goal of EduKit is to setup the required environment for developers in order to create/run a complete educational environment
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RelKinema
Relativistic two-body kinematics calculator for nuclear reaction
Relativistic 2-body kinematics calculator for nuclear reaction, including mass data manager, result table browser and plotter. -
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MendelChecker
QC for variant discovery from next gen sequence in pedigrees
MendelChecker is a likelihood-based measure of Mendelian segregation of Single Nucleotide Polymorphisms (SNPs) in nuclear pedigrees. We developed this method as a quality control measure for novel variant discovery from noisy next-generation sequencing data in pedigrees, such as Restriction site-associated DNA Sequencing (RAD-seq) in non-model organisms. This method implements comparison of heterogametic vs. homogametic transmission, i.e., sex linked vs. autosomal segregation. -
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PyRadMon
Automated reporting of Geiger Muller counter readings to RadMon.org
This project includes several Python and bash scripts designed to connect Geiger Muller counters to report their results to RadMon.org. Soon the script will also feature local logging, graphing and alerting. Just because the Cold War is "over" does not mean that there is no more threat of a radiological attack. In fact, the U.S. Homeland Security Council lists the "Detonation of a 10 Megaton Improvised Nuclear Device" as "Scenario #1" among the top 15 threats to American security. Or,... -
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Nuclei
Feature rich GUI for nuclear decay schemes
Nuclei is a software tool for the displaying of nuclear decay schemes and estimated energy spectra, the calculation of angular γ emission anisotropies, and the automated search for appropriate decay cascade properties. It uses the Evaluated Nuclear Structure Data Files (ENSDF). A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M. -
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Activity Prediction Software
To envision the radiation exposure in Neutron Activation Experiments
...The software also predicts gamma spectrum for each measurement. The predicted spectra agreed partially with measured spectra. This software has a XML database which includes nuclear data for frequently used materials in NAA. Neutron Neutron cross section data from ‘‘ Tables for Neutron Activation Analysis’’ , photon cross section data from Berger and Hubbell’s XCOM photon cross sections database [ 2], and isotope decay from from Lund/LBNL database are included in this database. -
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FAZIA DAQ
The aim of FAZIA project is to build a 4Pi array for charged particles
The FAZIA project groups together more than 10 institutions in Nuclear Physics, which are working in the domain of heavy-ion induced reactions around and below the Fermi energy (10-100AMeV). The aim of the project is to build a 4Pi array for charged particles, with high granularity and good energy resolution, with A and Z identification capability over the widest possible range. It will use the up-to-date techniques concerning detection, signal processing and data flow, with full digital electronics. ... -
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Burrow-owl is a software package for visualizing multidimensional nuclear magnetic resonance (NMR) spectra, with an emphasis on spectra used in macromolecular structure determination.
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XDAQ is a software platform designed specifically for the development of distributed data acquisition systems. The development is carried out at CERN, the European Organization for Nuclear Research. Please visit http://xdaq.web.cern.ch
