Search Results for "fiji"
Sort By:
Showing 12 open source projects for "fiji"
View related business solutions-
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
-
Secure File Transfer for Windows with Cerberus by RedwoodCerberus supports unlimited users and connections on a single IP, with built-in encryption, 2FA, and a browser-based web client — all deployable in under 15 minutes with a 25-day free trial.
-
1
InteredgeDistance
An ImageJ macro to measure distance between two lines
InteredgeDistance is a macro for ImageJ/Fiji image analysis software. This tool measures the distance between two user-drawn lines on an image. For community help/support, please use https://forum.image.sc/. -
2
These are plugins to Fiji (ImageJ) originally developed at Nuclear Medicine at Beth Israel, Boston MA. Pet_Ct_Viewer is for PET/SPECT - CT/MRI studies showing fusion of the modalities. Read_BI_Studies is for BI database activities. See http://petctviewer.org
-
3
FijiwingsPolarity
A tool to detect trichome polarity in the fly wing
Tools allow the detection of trichome polarity and direction rendered as (a) an arrow (black/white or color based on 360 degree direction) or (b) heat map of overlay. Files for download include (1) Fiji (Fiji Is Just ImageJ) package (.tar file) suitable for download (with and without Java Run Time) and (2) example images suitable for testing these tools. Further description to follow. -
4
FIJI ForthIsh Java Interpreter
Java interpreter with Forth-like syntax, use it for testing java libs
FIJI the ForthIsh Java Interpreter is an interactive environment with a procedural syntax similar to the Forth programming language. FIJI can load, introspect, and execute Java classes and methods. FIJI's main use is for unit and component testing of Java. -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
-
5
MORPHEUS for Fiji
A tool for unbiased and reproducible cell morphometry in Fiji/ImageJ2
MORPHEUS is a Fiji/ImageJ2 plugin for the automated evaluation of cell morphometry from cell cultures images acquired by fluorescence microscopy. Specifically, MORPHEUS works with sampling distributions to learn—in an unsupervised manner and by a non-parametric approach—how to recognize the cells suitable for subsequent analysis. Afterwards, the algorithm performs the evaluation of the most relevant cell-shape descriptors over the full set of detected cells. -
6
NRRD Image Library for C++
Header Only C++ Library to read and write NRRD image files
...It implements "the most important" parts of the following standard: http://teem.sourceforge.net/nrrd/format.html - Does not implement: line skip, byte skip, orientations, encodings other than raw, kinds other than domain. - Converts all type strings to C-type equivalent i.e. "uint8" to "unsigned char" - Always writes "endian" tag (required for FIJI/ImageJ loading) - Can open files of Big and little endian but saves files only in native format. It is compatible with ImageJ/Fiji http://fiji.sc/Fiji The library has been used in dozens of projects and is well tested. -
7
SMlocalizer
CUDA based ImageJ plugin for single molecule localization microscopy
...The plugin aims to be a user friendly and powerful alternative to currently availible softwares where most settings are iteratively obtained by the software, not the user. The current version handles 3D multichannel data in any format that can be loaded into ImageJ/ Fiji. 3D modalities supported are PRILM, Biplane, Double helix and astigmatism. -
8
clockscan
It is the Project for develop an ImageJ plugin
This plugin is used to measure the intensity of the brightness of the image of the radial scan profiles in the region of interest (ROI). Install the latest versions of bundled Java and either ImageJ or Fiji ImageJ as recommended on the respective websites, https://imagej.nih.gov/ij/ and https://fiji.sc/. In the text below, both programs will be referred to as “ImageJ”. Copy “Clock_Scan-1.0.1.jar” and “Multi_Clock_Scan-1.0.1.jar” or "Clock_Scan_combined-1.0.1.jar" and paste them into the ImageJ plugin directory. -
9
-
Full-stack observability with actually useful AI | Grafana CloudBuilt on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
-
10
iSBatch
Hyearchical Data Processing Plugin for ImageJ
iSBatch is a Java-based plugin for ImageJ (version 1.49d) or its distribution Fiji. iSBatch is designed for quick evaluation of analysis pipelines and visual exploration of datasets. It is distributed under an open open-source license (GNU General Public License, version 3). The plugin handles the data in a hierarchical fashion based on a source folder containing all data and little guidance provided by the user. -
11
2P Toolbox
Two-Photon Data Analysis Toolbox
The 2P_Tools.jar is a series of hopefully useful Fiji Plugins to evaluate data acquired by two-photon imaging. It supports multiple features like conversion to normalized image stacks, preprocessing and image segmentation. -
12
Airway Morphology for FIJI
FIJI App for Quantifying Airway Morphology
Run with FIJI make sure you have Fiji, AnalyzeSkeleton, Skeletonize3D, ImageViewer download .jar file into plugins folder, restart FIJI Input takes two 3D images (image stacks) 1.) Volume 2.) Skeleton representation of the volume. Output. Various airway morphometrics (eg. diameter, length), also tesselated 3D models
- Previous
- You're on page 1
- Next