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Citrus: Editing HiC data for de novo genome assembly
...Juicebox was specifically designed to tune or adjust genomic sequences based on HiC data. However, the current Juicebox version does not have a function to save updated HiC data and to summarize chromosome sequences. Thus, we created Citrus which can edit super-scaffolds according to chromatin conformation data captured in xxx.hic. Citrus updates HiC and assembles chromosome level sequences.
The Citrus project aims at collecting all the code for cancer systems biology developed by the Califano Lab. Including: ARACNe, pARACNe, DIGGIT and CINDy.
To make it easier to test my app (and hoping to get some real feedback
...Finally we start the app with:
% tpda3
Choose from the menu Test->Products, click on the magnifier glass icon than on the check icon and we should get a records list. Load the desired record by clicking on it and then on the Record tab.
Thank You, have fun!
Thank You +Mark deMark for Citrus Perl.
citrusdb is the open source customer care and billing software that can be used in many service industries, internet service, subscriptions, consulting, and telecommunications. Provides CRM, Ticketing, Invoicing, and Credit Card Batches.
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