Search Results for "bwt"

Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.

...Note - you could copy multiple sources into multiple places at once! You will be able to: - Copy files - Move files and entire directories - Delete directories - Encrypt individual files, - Compress using LZS, HUF, ARI, MTF, BWT Compressor speed was up to 4MB/s on 1GHz Celeron S370 ratio simmilar to NTFS compression built in. - There are GUI and non GUI versions created, compiled using many different compilers WATCOM, Visual Studio, Borland C++, Embarcadero 10.1 ported to Qt thanks to DFM2Qt. Instalation. Put executable wherever want. Want shell extension edit .reg file provided adjusting location, integrate it to registry. ...

This is a research project to possible improve compression using LZ77, LZSS or bwt, bwt is used on the bzip2 compression library, the v28 from 04/dec/2022 is the first version to almost beat lzma, indeed it is a tweak of lzma, the decoder for v28 will follow in a few days

BCM is a high-performance file compressor that utilizes advanced context modeling techniques to achieve a very high compression ratio. All in all, it's like a big brother of the BZIP2.

...OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data.

Batman-Seq: Basic Alignment Tool for MAny Nucleotides. A fast BWT-based short reads mapping tools which uses additional statistical method to model error profile of the sequencing experiment.

OpenDark is a free simplification of 'dark'. It's the first open BWT-DC compressor, which has a simple code, high speed and compression ratio. And it's waiting for your ideas! :)

The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).

The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).

Lossless compression program with various algorithms included. Intended for large XML files, but can compress any files. Best results with block compression (BWT+MTF+RLE) on large block over alphabet of words.

BGZip is a compressor that uses BWT and others techniques to compress archives, sounds and videos with in high compression rates.

Help implement an industrial strength Burrows-Wheeler transform compressor! Initial release covers block-sort, MTF coding, RLE coding, Huffman coding