Search Results for "burrows-wheeler"
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Showing 19 open source projects for "burrows-wheeler"
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Inductor Turns Calculator
Calculate number of turns needed to produce a coil with given L
Avoid by-guess-and-by-golly use of turns-to-inductance calculators to determine number of turns to yield the inductance you need. Using the inversion of Wheeler's formula for inductance of single-layer coils, calculates the number of turns required to produce a specified inductance. Specify desired inductance, coil radius, and winding pitch. -
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Bzip2 for Windows
A block-sorting file compressor, v1.0.6 for Win-32
Bzip2 compresses files using the Burrows-Wheeler block sorting text compression algorithm, and Huffman coding. Compression is generally considerably better than that achieved by more conventional LZ77/LZ78-based compressors, and approaches the performance of the PPM family of statistical compressors. by Julian Seward. -
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BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.
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bzip2
A file compressor/decompressor utility
bzip2 is a free and open-source file compression program that uses the Burrows–Wheeler algorithm. It only compresses single files and is not a file archiver. It is developed and maintained by Julian Seward. Seward made the first public release of bzip2, version 0.15, in July 1996. The compressor's stability and popularity grew over the next several years, and Seward released version 1.0 in late 2000. -
Red Hat Enterprise Linux on Microsoft AzureRed Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
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INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast... -
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ParaBWT - parallel BWT construction
a parallel and space-efficient Burrows-Wheeler transfrom constructor
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xxteac - XXTEA Encrypter/Decrypter
xxteac - XXTEA Encrypter/Decrypter
This xxteac program utilizes the "Corrected Block TEA" encryption/decryption algorithm by Roger Needham and David Wheeler. The original algorithm has been slightly modified to allow arbitary length passwords / password files. -
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Ben's Burrows
DF clone with multiplayer
A very superficial clone of Dwarf Fortress with the main goals being multiplayer support, mouse driven interface and slightly more modern graphics. https://github.com/bensmith87/yadf https://www.ohloh.net/p/yadf -
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staticcomp
Staticcomp - a file archiver
Staticcomp is a file archiver. It is a program using library libsc for compressing/decompressing files. Libsc uses compression method based on Burrows-Wheeler transform. For GST stage there are methods MTF, MTF-1, MTF-2, Timestamp, IFC and WFC. -
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CUSHAW: CUDA-based Short Read Alignment
the first aligner introducing a complete paired-end alignment on GPUs
CUSHAW is a CUDA compatible short read aligner to large genomes, such as the human genome, based on the Burrows Wheeler transform. -
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This software is used to grab articles from a wordpress 'master site' and post articles back to a bunch of wordpress sister sites. This is mostly used by SEO professionnals to generate backlinks. This software is not a wordpress plugin!
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The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
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The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
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Secure Addressbook is based on the JavaScript implementation of Wheeler & Needham's Block TEA (Tiny Encryption Algorithm) by Chris Veness. It allows maintaining secure records even the on shared hosting server, as data en/decrypted at browser only.
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The Tiny Encryption Algorithm (TEA) was developed by David Wheeler and Roger Needham at the Computer Laboratory of Cambridge University. The variant used was developed by David Wagner. TEACrypt 80x86 is the porting of this algorithm to the 80x86 platform
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Help implement an industrial strength Burrows-Wheeler transform compressor! Initial release covers block-sort, MTF coding, RLE coding, Huffman coding
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This is an academic project. A library and a sample program will be developed, that will implement the Burrows-Wheeler compression algorithm, using C++ and templates. This is the same algorithm for BZip.
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