SCEO
Single Cell Event Ordering Algorithm
This is an implementation of the Single Cell Event Ordering algorithm that was described in J. De Bie et al., "Single cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukaemia".
Usage:
java -jar SCEO.jar input=input.txt output=output.txt N=n
with
input = input file containing tab delimited matrix with for each gene a (named) row and for each cell a (named) column with the values 1=event present, 0=event absent, -1=NA
output = output...