Search Results for "python data analysis" - Page 86
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Showing 5184 open source projects for "python data analysis"
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Indexmeister
automatic indexing for large LaTex documents
Indexmeister reads a variety of formats (.tex, .docx, .epub, and others) and suggests keywords for indexing. The included program Imbrowse provides a semi-automatic interface to rapidly add index tags to multi-file latex documents. -
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Edge.js
Run .NET and Node.js code in-process on Windows, MacOS, and Linux
An edge connects two nodes. This edge connects Node.js and .NET. V8 and CLR/.NET Core/Mono - in process. On Windows, MacOS, and Linux. You can script C# from a Node.js process. Edge.js allows you to run Node.js and .NET code in one process on Windows, MacOS, and Linux. You can call .NET functions from Node.js and Node.js functions from .NET. Edge.js takes care of marshalling data between CLR and V8. Edge.js also reconciles threading models of single threaded V8 and multi-threaded CLR. Edge.js... -
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BEMoDA
Dissolution profile comparison Model Dependent-Independent Approach
Dissolution profile comparison (Biowaiver aid) Model Dependent-Independent Approach scripts for in-vitro dissolution profile comparison as proposed by Sathe et al. in 1996 (Sathe PM, Tsong Y, Shah VP. In-vitro dissolution profile comparison: statistics and analysis, model dependent approach. Pharm Res. 1996 Dec;13(12):1799-803) and Tsong et al. in 1996 (Tsong Y, Hammerstrom T, Sathe P, Shah VP. (1996) Statistical Assessment of Mean Differences between Two Dissolution Data Sets, Drug Info. J. 30... -
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This project contains a set of python scripts to manipulate, read, join and plot information obtained from the PROCAR file as obtained from the VASP code. The scripts are able to do fat band analysis, plot bands by atom, spin, etc. It is able to manage non polarized, polarized and non collinear calculations. A set of simple examples are given to guide the user.
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TARQUIN
MRS/NMR analysis software
Analysis software for MRS/NMR data. Allows processing and fitting to be performed in a fully automatic workflow. -
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PyAIMLng
The Next Generation of Python AIML Interpreter
A Python AIML interpreter with non-compliant extensions. PyAIMLng is an interpreter for AIML (the Artificial Intelligence Markup Language), forked from Cort Stratton's PyAIML. PyAIMLng adds additional features which are not part of the AIML 1.0.1 specification in order to provide the bot master with a rich set of tools from which to build a more believable AIML bot. -
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PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration... -
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Genomecomb is a package for the analysis of complete genome data. It can be used to compare, annotate and especially filter the results of complete genome sequencing.
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chemfiles
Modern library for chemistry file reading and writing
Chemfiles is a modern and high-quality library for reading and writing trajectory files created by computational chemistry simulations program. These trajectories contains atomic positions, velocities, names, topology and sometimes more. Running simulations produce enormous amounts of data, which has to be post-processed to extract physical information about the simulated system. Chemfiles provides an interface to access this information which is - unified: the same code will work with all... -
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A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae * The foundation of this web source is CodeIgniter. * After setting the CodeIgniter framework, unzip it under the default home directory. The database is based on Maria DB (mysql). Download the schema and import it into the DB. Each species you want to analyze needs blast results. Fit the fields to match the schema and it will work.
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AnyWave is a multi-platform software designed for neurologists and researchers who want to visualise and apply signal processing on electrophysiological signals. AnyWave can handle EEG, SEEG, MEG and more. MATLAB/Python/C++ plugins can be added. See this wiki section to learn how to build AnyWave on Linux : http://meg.univ-amu.fr/wiki/AnyWave:BuildSDK
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GAPE
proteogenomic analysis software
GAPE is a one-stop proteogenomic informatics software that provides a multifaceted and standard workflow against eukaryotes in proteogenomic data-analysis cycle for genome refinement and global identification of PTM events. This software allows concurrent querying of proteomic and genomic databases to refining the genome and proteome annotations comprehensively. This includes MS data and database construction, database searches, FDR calculations, statistical result integration, validation... -
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HCS Analyzer
High Content Screening Analyzer
HCS Analyzer is an open source software dedicated to High Content Screening data processing and analysis. -
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Peptrix
Label free peptide profiling
Peprix is a software application for label-free peptide profiling written in Java, using a MySQL database. Peptrix is able to detect and identify significantly differentially expressed peptides in peptide profiles obtained from body fluids of patient and control groups. The presented modular software is capable of central storage of mass spectra and results in fast analysis. The software architecture consists of 4 pillars 1) a Graphical User Interface written in Java, 2) a MySQL... -
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Construct2D
COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils
Construct2D is a grid generator designed to create 2D grids for CFD computations on airfoils. The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available... -
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Network software for annotation and quality control of distributed data. Supported by NSF: DBI 0646266 and NSF: DBI 0960535. http://wiki.filteredpush.org
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Needle
The iOS Security Testing Framework
Needle is an open-source, modular framework to streamline the process of conducting security assessments of iOS apps. Needle was originally made to work with iOS 9 and iOS 10. Since then, Frida was released and become the defacto tool to use with mobile security assessments. Some common Frida mobile security scripts were later implemented within Needle, as some of these scripts worked better or addressed some issues that were present in Needle's custom tooling. Assessing the security of an... -
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Calculation of camshafts - allows to define a camshaft profile on the set trajectory which should provide the given mechanism. The trajectory can be set graphically, co-ordinates or function.
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GENSENG
GENSENG is a software detecting CNVs from NGS data
GENSENG is a software detecting CNVs(Copy Number Variations) from NGS(Next Generation Sequencing) data. We have uploaded the data preparation codes. Please download it from Files folder. -
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lr2rmats
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/ -
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Seq2seq Chatbot for Keras
This repository contains a new generative model of chatbot
This repository contains a new generative model of chatbot based on seq2seq modeling. The trained model available here used a small dataset composed of ~8K pairs of context (the last two utterances of the dialogue up to the current point) and respective response. The data were collected from dialogues of English courses online. This trained model can be fine-tuned using a closed-domain dataset to real-world applications. The canonical seq2seq model became popular in neural machine translation... -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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DualTranscriptDiscovery
Transcript-discovery approach for gene feature delimitation by RNA-seq
This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken... -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated...
