Search Results for "regular expression tool" - Page 8
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Showing 484 open source projects for "regular expression tool"
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The Deep Review
A collaboratively written review paper on deep learning, genomics, etc
This repository is home to the Deep Review, a review article on deep learning in precision medicine. The Deep Review is collaboratively written on GitHub using a tool called Manubot (see below). The project operates on an open contribution model, welcoming contributions from anyone. To see what's incoming, check the open pull requests. For project discussion and planning see the Issues. As of writing, we are aiming to publish an update of the deep review. We will continue to make project... -
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Information Extraction from Arabic Text
Java based framework for extraction information from Arabic text
This project presents a model a for extracting information from Arabic text. The project executables include three Java based modules that can be used to implement a rule-based information extraction process from Arabic text. These modules are: 1-A module for annotating a selected Arabic text file using a custom morpho-syntactic Part-of-Speech tagging scheme. 2-A module that can be used along with Protégé for establishing Ontology Web Language (OWL) based ontologies based on... -
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FastRoute
Fast request router for PHP
This library provides a fast implementation of a regular expression-based router. Firstly, while writing a PHP extension is obviously a lot of fun, it is unlikely to be particularly beneficial in terms of performance unless the code involves computations in tight loops. Porting “normal” components like routers to C is usually a big waste of time. You can get much better results by doing a few small improvements on the algorithmic side. -
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Civilizer
Civilizer - Tool to efficiently manage your data/knowledge/idea
...It helps you view multiple data in the same screen eliminating the need to jump across separate pages. Also Civilizer has its own file system. You can store any file with Civilizer and link files to Civilizer's regular data. -
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Acoustic Research Tool (ART)
Acoustic Simulation Library for Frequency and Time Domain Simulations.
ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX... -
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Bootstrap Tour
Quick and easy product tours with Twitter Bootstrap Popovers
...If you have URLs for each page that have unique paths, and the dependencies are loaded on each page, you can easily create a tour. If you do not know the URL you wish to go to because it contains a different value per user or per instance, you can use a regular expression as the path attribute and set the redirect attribute to a function that performs the redirect. -
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deploy.NET
Tool for building and deploying Microsoft.NET applications.
deploy.NET is NOT for creating setup files! It is a tool to run scripts to automatically build, package and upload a .NET application to an FTP server. A different script can then be run on the customer's machine for downloading, unpacking and installing your application. -
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MethyMer
Design of specific primer combinations for bisulfite sequencing
...It also incorporates TCGA CpG methylation (microarrays) and gene expression (RNA-Seq) data, as well as methylation-expression correlation analysis results for 20 human cancer types. ENCODE genome regions annotation data are also integrated in MethyMer -
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CUBiBit
Tool to search binary biclusters on CUDA-enabled GPUs
CUBiBit is a parallel tool to accelerate the search of biclusters on binary datasets using CUDA-enabled GPUs. This data mining procedure is especially useful for gene expression data. This tool receives as input a file with ARFF extension that contais the binary values of m attributes and n samples and returns a file with the biclustering information. It is able to exploit the parallel capabilities of manycore NVIDIA GPUS. -
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HiBeaver
HiBeaver is a gradle plugin for java byte code manipulation and AOP
HiBeaver is a gradle plugin for java byte code manipulation and AOP design by modifying project byte code during build of the package, or modifying byte code within Jar independently. Combined with the powerful Java ASM bytecode modification tool and Gradle Transform API, HiBeaver can modify the Java bytecode contained in the project according to the user's configuration during the Android application compilation stage, so that users can only use Gradle Configure code injection and AOP... -
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Regex Creator
Tool to help create regular expressions (regex)
Regex Creator is a tool to help create regular expressions (regex). The goal is to make it as easy and as fast as possible to create regex. You paste the text to parse, specify the values to extract and generate the regex. You can also debug a regex. New v2.0 has improved UI. -
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libvcr
A C++ library for managing configuration files via regular expressions
This library is supposed to be used in your C++ programs for managing simple Unix configuration files like /etc/hosts. The library allows to create default configuration, read the configuration file, validate each found option or value with C++ std::regex, automatically remove incorrect options and even merge several configurations with predefined priorities for each option. So it may be useful in programs which use several configuration files. For an extra example of the library usage see... -
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Binary Stream Editor
A stream editor in java that can handle text/binary formats
A stream editor that can be invoked by another java program or also the command line. It can handle binary data too. Unlike newline based programs like sed, it allows different ways of reading the stream through the traverser, buffer and commands interfaces. A traverser decides how the data is read. This data is stored in the buffer. The commands decide what to do with this data. All data is handled as characters, by specifying an encoding. For binary data, the encoding ISO-8859-1 is used... -
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Klein
A fast & flexible router
klein.php is a fast & flexible router for PHP 5.3+. Flexible regular expression routing (inspired by Sinatra) A set of boilerplate methods for rapidly building web apps. Almost no overhead. Unit tests are a crucial part of developing a routing engine such as Klein. Added features or bug-fixes can have adverse effects that are hard to find without a lot of testing, hence the importance of unit testing. -
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BPGA
A tool for ultra-fast pan-genome analysis of microbes.
BPGA is a fast pan-genome analysis tool for microbial genomes. Along with regular pan genome profiles, BPGA also provides detailed statistics and sequences with their downstream analysis like KEGG/COG assignments and phylogeny based on core as well as pan genome. In addition, it also studies genes with extreme/atypical GC contents as that of the genomic GC content, sub-grouping of large datasets etc. -
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PHP Server Monitor
Open source tool to monitor your servers and websites
...For websites you can enter a link and it will check the HTTP status code. If the HTTP status code is in the 4xx range or a timeout, it means an error occurred and the tool will start sending out notifications. You can also set a regular expression to match for content on the page itself. Each server has its own settings regarding notification. You can choose for email, text message (SMS) and Pushover.net notifications. For more info please visit http://www.phpservermonitor.org -
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Coffee Tools
Various file manipulation tools written in Java with source included.
...HttpClient: Single web page GETter. InFileFind: Find where/at a file is inside another NumeredFilesCombiner: Combine a directory of files with numbered-filenames. PassCrypt: A tool for password-en/decrypting a file. RecursiveUnzip: Unzip all the zip files in a directory tree, with optional filename mangling RegFilesRenamer: A mass-file renamer using regular expressions. RLETool: A file compressor/decompressor. SimilarFileFinder: Discover which files in a path are most similar to a given file or path of files. ... -
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sfbf
Useful console application to search for largest files on file systems
sfbf (Search For Big Files) is a useful console application to search for largest files on file systems. It brings features such as : - Fast file search to locate largest files - Configurable search depth - Various output formats (txt, json, xml, html, csv) - Regular expression matching This project is licensed under the WTFPL (Do What The Fuck You Want To Public License, Version 2) Copyright © 2017 spypunk spypunk@gmail.com This work is free. You can redistribute it and/or modify it under the terms of the Do What The Fuck You Want To Public License, Version 2, as published by Sam Hocevar. ... -
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sfbf-ui
UI frontend for sfbf, a useful application to search for largest files
UI frontend for sfbf, a useful application to search for largest files on file systems It brings features such as : - Fast file search to locate largest files - Configurable search depth - Various export formats (txt, json, xml, html) - Regular expression matching This project is licensed under the WTFPL (Do What The Fuck You Want To Public License, Version 2) Copyright © 2017 spypunk spypunk@gmail.com This work is free. You can redistribute it and/or modify it under the terms of the Do What The Fuck You Want To Public License, Version 2, as published by Sam Hocevar. ... -
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OraMasking
Data masking tool for Oracle database
For Oracle database, mask sensitive data by replacement (static or expression), substitution (synthetic data set is included), random values (Lorum Ipsum) or deletion. Generates update/delete statements or triggers or runs directly against the database. -
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TSWeChat
A WeChat alternative. Written in Swift 5
TSWeChat - A WeChat alternative, updated to Swift 5. The cell image in TSChatImageCell is drawn by using a Mask Layer. The chat background can be changed freely so that UI will look perfect. Audio wav files can be automatically converted into amr files which facilitate file transfer to Android devices. Both of the two types of files have been cached. -
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CyNetSVM is a tool developed in JAVA and integrated as a Cytoscape APP to predict clinical outcome and identify network bio-markers by integrating gene expression data and PPI data. The app can be installed directly from Cytoscape app store. We also provided the package at http://sourceforge.net/projects/netsvmjava/files/netSVM.zip/download The example data to test the package is available at http://sourceforge.net/projects/netsvmjava/files/Example.zip/download The user manual is available at http://sourceforge.net/projects/netsvmjava/files/UserManual_CyNetSVM.pdf/download
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Data2FCS
Data2FCS is a simple tool to convert text data files to FCS3.1 data.
Impressum / Legal Notice Sven Mostböck Murlingengasse 25/5 1120 Wien Austria e-mail: sven_mostboeck@users.sourceforge.net second contact option: use the open discussion on the FCSalyzer sourceforge page: http://sourceforge.net/p/fcsalyzer/discussion/ Information: Flow cytometry software is a perfect way to analyse complex data sets with large sample size. Data can be easily visualized to identify correlations and subpopulations. Subpopulations can be selected and analysed... -
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CopyRightNoticeGenerator
Shell script and template for the GPL copy right notice.
...Example for how to use the 'here document' In the UNIX shell scripting, the idiom by 'here document' can make the variable substitution easier. And this shell script depends on the 'here document' expression. So, you can think of it as the example of how to use the 'here document'. -
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EpiMINE
program for mining epigenomic data
...This application performs genome wide based quantitative and correlative analysis between different annotated or raw chip-seq like datasets in the regions of interest (RI). Apart from this the tool takes the advantage in linking results with expression data. It is available both in graphical user interface and in command line form. It can be executed in Mac and Linux platforms. Dependencies: python >= 2.7 version python packages: rpy2(v2.8.1), pysam(>0.8.4), pybedtools(v0.7.7) and wxpython (only for GUI form) R with following packages: gplots, ggplot2, RColorBrewer, FactoMineR, kernlab, bnlearn, igraph, fastcluster, caret and ROCR bedtools (2.16/2.17/2.25) Manual & different forms of EpiMINE can be downloaded is available under "Browse Files" section For any help, you can reach us at epimine.help@gmail.com
