Search Results for "genetic algorithm java" - Page 8
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Showing 732 open source projects for "genetic algorithm java"
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Oxe is a web application that enables network monitoring. It is built on a service-oriented and a demon that uses the round robin algorithm for monitoring architecture. Written in Java GPL v3 license.
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AESA
All-purpose Encryption and Security Adaptation
Starting as a personal study project, I have decided to share this security project. For now, it is a JAVA program that can be used to encrypt and decrypt simple file content (ie files), possibly later evolving into a utility with user interface and/or a library -
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GeneticThesaurus
Annotation of genetic variants in repetitive regions
GeneticThesaurus enables analysis of genetic variation in repetitive regions. See project wiki for details. -
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Simple File Manager
A simple file manager especially for flash disks
It is a simple software implemented with Java. The running environment is Java SE8, with some features of Javafx to improve the UI appearance. -
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. -
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HaploView is a Java based tool for use by biologists in the study of genetic haplotype data. It provides a quick, easy interface to many common tasks involved in such analyses. Please go to the homepage below for the latest version!
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sWangTiler
A java implementation that generates wang tiles from any input image.
...This implementation is based on the strict wang tile algorithm as proposed by Xinyu Zhang and Young J. Kim in "Efficient Texture Synthesis Using Strict Wang Tiles". In order to calculate the lowest cost path between any edge- and sample image an implementation of Dijkstra's algorithm is used which was found in the java graph library 'JGraphT'. Credits to all mentioned parties and to http://www.texturemate.com/. -
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU.... -
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ESTReMo
An evolutionary simulator of transcription regulatory networks
ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds. -
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deapheap
Deap is a doubly heap for both min and max number access.
A deap is a doubly priority queue for efficient data operations. Both insertion and deletion operations take O(log(N)) time. Access of min or max takes constant time. It can be useful when both min and max are needed in the queue. It can also be used in situations where the number of items is too large and items with low priorities can be dropped with keep memory footprint small. -
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MODLEM
rule-based, WEKA compatible, Machine Learning algorithm
This project is a WEKA (Waikato Environment for Knowledge Analysis) compatible implementation of MODLEM - a Machine Learning algorithm which induces minimum set of rules. These rules can be adopted as a classifier (in terms of ML). It is a sequential covering algorithm, which was invented to cope with numeric data without discretization. Actually the nominal and numeric attributes are treated in the same way: attribute's space is being searched to find the best rule condition during rule... -
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Intelligent Keyword Miner
Intelligent SEO keyword miner and predicing tool
THIS IS A NETBEANS 8.02 PROJECT ENGLISH ONLY This program was made to help me with the patent research. It simply generates the search keywords, based on your upvotes or a downvotes of the input parameters. It can accept a text or URL (text takes a prescedence over the URL). If you input URL, it goes to a page, and learns its text from HTML format. This program is intelligent as it predicts what you may want to search next, based on your personal trends. After searching the... -
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Cenobi
cost estimation and management accounting, using neural networks
Cenobi is designed for management accountants, not (only) for statisticians and data mining experts. Carefully arranged default settings make sure you can concentrate on Cenobi's many accounting features rather than worrying about setting up artificial neural networks or genetic algorithms, which are the main machine learning tools under Cenobi's hood. Cenobi's main benefits are: - ease of use - Utilizing artificial neural networks to estimate cost relationships, Cenobi is able to... -
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fPotencia
Power flow library in C++
fPotencia is the fruit of free time and passion for power systems simulation. After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base... -
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Evolutionary Nursery
A simple genetic algorithm for numerical optimization
Evolutionary nursery is a result for my passion for developing genetic algorithms. I implemented this simple GA in 2008. This is especially intended for numerical optimization problems. -
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OnAGUI - Ontology Alignment GUI
Software to help automatic or manual realisation of ontologi alignment
This project has moved to https://github.com/lmazuel/onagui - OnAGUI (Ontology Alignment Graphical User Interface) is a project of alignment helper and viewer. You can edit ontology (SKOS, OWL) and edit alignment between concept of these ontologies. In addition, you can make automatic discovery of alignment, using different kind of algorithm. This work was initiated by Jean Charlet (http://www.limics.fr/index.php/annuaire), designed and developped by Laurent Mazuel on a post-doctoral... -
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mpz_aprcl32
MPZ APRCL32 can prove the primality of numbers, written in C and GMP.
This code contains an implementation of the APR-CL primality proving algorithm. It is a conversion of the Java based APRT-CLE written by Dario Alpern, who had written his based on the UBASIC version from Yuji Kida. This version incorporates improvements based on Jason Moxham's APR-CL code, which greatly reduced run-time memory requirements. mpz_aprcl is meant to be compiled on systems that support C, GMP, and a 64-bit data type. -
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mpz_aprcl
MPZ APRCL can prove the primality of numbers, written in C and GMP.
This code contains an implementation of the APR-CL primality proving algorithm. It is a conversion of the Java based APRT-CLE written by Dario Alpern, who had written his based on the UBASIC version from Yuji Kida. This version incorporates improvements based on Jason Moxham's APR-CL code, which greatly reduced run-time memory requirements. mpz_aprcl is meant to be compiled on systems that support C, GMP, and a 64-bit data type. -
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An easy-to-implement library that can assist Java developers in using the GeoHash algorithm in order to create geocodes based on custom latitude and longitude values. With the help of jGeohash, software developers will be able to quickly and easily generate a geohash code using user-defined latitude and longitude values. By using the GeoHash algorithm, the space can be divided into multiple grid shapes.
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BONESA is an open source, user-friendly interface for tuning the numerical parameters of metaheuristics. This package includes a multi-objective parameter tuning algorithm and visualizations of the performance landscape.
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Enfomi
Encryption App
Enfomi is a cross-platform standalone password-based encryption/decryption program that supports 27 algorithm variants (including AES 256bit). Archives can be self-decrypting, thus making it perfect for mobile applications. -
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Evokit is an integrated environment for developing evolutionary computation algorithms. It is built around Java and the Eclipse platform, and will support several different libraries including ECJ.
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backdup
BackDup is a Duplicity front-end for MacOS and Linux
BackDup is a Duplicity (http://duplicity.nongnu.org/) front-end for MacOS and Linux written in Java. Duplicity creates bandwidth-efficient backup using the rsync algorithm. Mac OS users: please install Duplicity via macports (https://www.macports.org/) Linux users: install Duplicity via your package manager as usual. -
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JAS is a java library for creating agent based simulations. It features a discrete-event time engine, APIs for network simulation design, powerful yet easy-to-use implementations of Genetic Algorithms and Neural Networks.
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FamSeq
Variant calling on the basis of pedigree information
...FamSeq accommodates de novo mutations and can perform variant calling at chromosome X. To accommodate variations in data complexity, FamSeq consists of three distinct implementations of the Mendelian genetic model: the Bayesian network algorithm, Elston-Stewart algorithm and Markov chain Monte Carlo algorithm. To make the software efficient and applicable to large families, we parallelized the Bayesian network algorithm that copes with pedigrees with inbreeding loops without losing calculation precision on an NVIDIA® graphics processing unit.
