Search Results for "alignment" - Page 8
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Showing 522 open source projects for "alignment"
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ChatGPT DAN
ChatGPT DAN, Jailbreaks prompt
...It highlights both the capabilities and limitations of large language models when exposed to unconventional instructions. The project reflects ongoing experimentation within the AI community around control, alignment, and creative use of generative systems. -
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kSNP
kSNP4 does SNP discovery and SNP annotation from whole genomes
kSNP4 identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP4 can take 100's of microbial genomes as input. A SNP locus is defined by an oligo of length k surrounding a central SNP allele. kSNP4 can analyze both complete (finished) genomes and unfinished genomes in assembled contigs or raw, unassembled reads. Finished and unfinished genomes can be analyzed together, and kSNP can automatically download Genbank files of the finished genomes and incorporate the information in those files into the SNP annotation. ... -
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dear jvm imgui
Bloat-free Immediate Mode Graphical User interface for JVM
kotlin-graphics/imgui is a Kotlin port and wrapper of the Dear ImGui immediate-mode graphical user interface, designed to integrate seamlessly with JVM-based OpenGL applications. It brings the powerful, real-time GUI-building capabilities of ImGui to Kotlin developers, allowing rapid development of tools, in-app editors, and visual debuggers with a highly intuitive syntax. The project closely mirrors the original C++ ImGui API, while adding idiomatic Kotlin features and bindings for... -
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OpenNMT-tf
Neural machine translation and sequence learning using TensorFlow
...For example, the following instance defines a sequence-to-sequence model with 2 concatenated input features, a self-attentional encoder, and an attentional RNN decoder sharing its input and output embeddings. Sequence to sequence models can be trained with guided alignment and alignment information are returned as part of the translation API. -
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LF Aligner helps translators create translation memories from texts and their translations. It relies on Hunalign for automatic sentence pairing. Input: txt, doc, docx, rtf, pdf, html. Output: tab delimited txt, TMX and xls. With web features. My email address is listed in readme.txt; for support, use the forum here. My personal website: www.farkastranslations.com.
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This software solves the Phylogeny problem using Median Networks. Exact and heuristic methods available. Input: an alignment and a reversible stepmatrix, output: (sub)optimal trees and their combinations. Steiner problem solver included.
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RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. -
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OptiMate
Libraries for optimizing AI models, inference speed, and GPU usage
Optimate is an open source collection of libraries designed to optimize the performance and cost efficiency of artificial intelligence models across different stages of the machine learning lifecycle. It groups several internal optimization tools developed by Nebuly AI into a single repository that focuses on improving inference speed, reducing infrastructure usage, and streamlining model training workflows. Its modules help developers automatically apply optimization techniques that better... -
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SimpleXlsxWriter
C++ library for creating XLSX files for MS Excel 2007 and above.
This library represents XLSX files writer for Microsoft Excel 2007 and above. The main feature of this library is that it uses C++ standard file streams. On the one hand it results in almost unnoticeable memory and CPU resources consumption while processing (that may be very useful at saving a large data arrays), but on the other hand it makes unfeasible to edit data that were written. Hence, if using this library the structure of the future report should be known enough. The library... -
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CPT
CPT: A Pre-Trained Unbalanced Transformer
...Position Embeddings We extend the max_position_embeddings from 512 to 1024. We initialize the new version of models with the old version of checkpoints with vocabulary alignment. Token embeddings found in the old checkpoints are copied. And other newly added parameters are randomly initialized. We further train the new CPT & Chinese BART 50K steps with batch size 2048, max-seq-length 1024, peak learning rate 2e-5, and warmup ratio 0.1. Aiming to unify both NLU and NLG tasks, We propose a novel Chinese Pre-trained Un-balanced Transformer (CPT). -
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MTCNN Face Detection Alignment
Joint Face Detection and Alignment
MTCNN_face_detection_alignment is an implementation of the “Joint Face Detection and Alignment using Multi-task Cascaded Convolutional Networks” algorithm. The algorithm uses a cascade of three convolutional networks (P-Net, R-Net, O-Net) to jointly detect faces (bounding boxes) and align facial landmarks in a coarse-to-fine manner, leveraging multi-task learning. Non-maximum suppression and bounding box regression at each stage. -
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Facexlib
FaceXlib aims at providing ready-to-use face-related functions
facexlib is a PyTorch-based library providing ready-to-use face-related functions, including detection, alignment, recognition, and more. It integrates state-of-the-art open-source methods for various face processing tasks. -
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Cylindrical Alignment App
Arranges alignments in a rotating cylinder
The Cylindrical Alignment App is the successor to Cylindrical BLAST Viewer. Similarly, it arranges search or other comparisons, against their "axis". Searches can be made by Basic Local Alignment Search Tool, ClustalW, or Gene Machine to name a few. This version does not require downloading or installing Java3D, and has more modern GUI features. -
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JavaScript and React Patterns
Repo related to the FrontendMasters course on JavaScript and React
JavaScript and React Patterns showcases idiomatic patterns and anti-patterns for building React applications, focusing on readability, performance, and maintainability. It translates fuzzy best practices into concrete examples—how to compose components cleanly, manage state thoughtfully, and avoid foot-guns with effects and memoization. The guidance leans on modern React paradigms like hooks, context, custom hooks, and component composition to replace older, heavier patterns. Performance... -
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mPDF
PHP library generating PDF files from UTF-8 encoded HTML
...Right-to-left languages are supported, with automatic detection of RTL characters within a document. Transposes tables, lists, text justification, and table cell alignment, as well as a full-text reversal for RTL characters. Automatically detects non-RTL characters and displays these in the original order. -
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GLIDE (Text2Im)
GLIDE: a diffusion-based text-conditional image synthesis model
...The repository provides both model code and pretrained checkpoints, making it possible for researchers and developers to experiment with text-to-image synthesis. GLIDE includes advanced techniques such as classifier-free guidance, which improves the quality and alignment of generated images with the input text. The project also offers sampling scripts and utilities for exploring how diffusion models can be applied to multimodal tasks. As one of the early diffusion-based text-to-image systems, glide-text2im laid important groundwork for later advances in generative AI research. -
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CView
Alignment viewer that incorporates a dynamic graphical network.
> CView wiki: https://sourceforge.net/p/cview/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: (See wiki) 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: https://sourceforge.net/projects/tvscript/ 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. TreeScope: https://sourceforge.net/projects/treescope/ -
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ManifoldLearning
Package for manifold learning and nonlinear dimensionality reduction
A Julia package for manifold learning and nonlinear dimensionality reduction. Most of the methods use k-nearest neighbors method for constructing local subspace representation. By default, neighbors are computed from a distance matrix of a dataset. This is not an efficient method, especially, for large datasets. -
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Peptide Pattern Recognition
Software for non-alignment based analysis of DNA and protein sequences
Software for analysis, grouping and functional prediction of DNA and protein sequences as described in: Busk P.K. (2017). Peptide Pattern Recognition for high-throughput protein sequence analysis and clustering. BioRxiv. doi: https://doi.org/10.1101/181917. Busk P.K. and Lange L. (2013). Function-based classification of carbohydrate-active enzymes by recognition of short, conserved peptide motifs. Appl Environ Microbiol. 79(11), 3380-91. Busk P.K. Lange M. Pilgaard B. and Lange L. (2014).... -
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Covidex
Ultra fast and accurate subtyping tool of viral genomes.
Viral subtypes or clades represent clusters among isolates from the global population of a defined species. Subtypification is relevant for studies on virus epidemiology, evolution and pathogenesis. In this sense, Covidex was developed as an open source alignment-free machine learning subtyping tool. It is a shiny app that allows fast and accurate classification of viral genomes in pre-defined clusters. If more than 1000 sequences are loaded the tool will run in multithread mode. Capable of classifying 16000 genome sequences in less than a minute (AMD Ryzen 7 1700 8-core Processor 3 GHz) For a Web-based version of the app (only for small datasets: 100 seqs max) please go to http://covidex.unlu.edu.ar If you use Covidex please consider citing the following preprint: https://biorxiv.org/cgi/content/short/2020.08.21.261347v1 If you think my work is useful you can buy me a coffee! ... -
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Following Instructions with Feedback
Training Language Models to Follow Instructions with Human Feedback
The following-instructions-human-feedback repository contains the code and supplementary materials underpinning OpenAI’s work in training language models (InstructGPT models) that better follow user instructions through human feedback. The repo hosts the model card, sample automatic evaluation outputs, and labeling guidelines used in the process. It is explicitly tied to the “Training language models to follow instructions with human feedback” paper, and serves as a reference for how OpenAI... -
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Tile Pattern Exporter
Tile large format PNG patterns into print-at-home PDF pages
...Created for LearnMYOG. This set of scripts automates the tiling of large format PNG files into letter(A4), tabloid(A3), and A0 sized PDF pages with print margins, alignment and cut guides, page numbers, and a copyright stamp to each page. For best results, input an exported PNG with size in multiples of 7.5 inches wide and 10 inches tall @ 300dpi. -
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Forem
For empowering community
...The platform supports rich authoring (markdown, embeds), comment threading, reactions, and community curation so content creators and readers can engage in meaningful discussions rather than transient exchanges. Forem is designed to be portable and extensible: it exposes APIs for ingestion and embeds, theming options for brand alignment, and admin features for content policy, moderation workflows, and analytics. It encourages community governance patterns that let moderators and members participate in shaping norms and surfacing high-quality content. -
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...These are now hosted by the github.com/Portmidi/ project, where you can find the lastest versions of PortMidi, portsmf (Standard MIDI File support and more), and see github.com/rbdannenberg/scorealign for MIDI and/or Audio score alignment.
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CLIP Guided Diffusion
A CLI tool/python module for generating images from text
...Non-square Generations (experimental) Generate portrait or landscape images by specifying a number to offset the width and/or height. Uses fewer timesteps over the same diffusion schedule. Sacrifices accuracy/alignment for quicker runtime. options: - 25, 50, 150, 250, 500, 1000, ddim25,ddim50,ddim150, ddim250,ddim500,ddim1000 (default: 1000) Prepending a number with ddim will use the ddim scheduler. e.g. ddim25 will use the 25 timstep ddim scheduler. This method may be better at shorter timestep_respacing values. Multiple prompts can be specified with the | character. ...
