Search Results for "input-leap" - Page 77
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Showing 3572 open source projects for "input-leap"
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at http://git.durrantlab.com/jdurrant/binana . Versions on SourceForge are not up to date. -
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PhyloPipe
PhyloPipe is a combination of some polular phylogenetic software
...Analysis of the evolutionary biology, one of the main branches of bioinformatics, uses several common software such as HaMStR,MUSCLE, RaxML. Running different procedures successively, we can get the evolutionary analysis eventually. Since the input and output data between different software are not always compatible for each other, the intermediate results need to be processed outside these software, which definitely brings trouble for biologists. Therefore, developing a graphical molecular phylogenetic analysis software is sure to improve the efficiency of evolutionary analysis in a large scale. -
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intzip
Fast compression of integer sets.
...Compression means that a suitable list of integers can be encoded to a (whenever possible) shorter list of the same integer format. An arbitrary set of integers (i.e., a collection of unique numbers where the order does not matter) may be transformed into suitable input data by way of translation and sorting. The main focus of the algorithm is to encode structural characteristics of a given list, such as coherent intervals and repeated distances. Therefore, the quality of compression depends on diversity rather than size. In most cases, IntZip is able to achieve much better compression results than general compression algorithms on such data sets. -
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Minimalistic cross-platform compiler for Component Pascal language, subset of BlackBox Component Builder 1.6 RC5 (forked subsystem Dev), capable to produce stand-alone software from command-line.
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jSimpleTools
A simple tool box to assist in coding tests in Java.
This is a simple library to help with writing tests in java. SimpleContext: a lightweight (and fast!) IoC container to quickly create test contexts. StringGenerator: a random string generator using a regex as input. Sequence: a convenience wrap around a simple long to help convey meaning to the sequence. Even minor revisions will have the stable/released code base. Use it in your projects without fear. Odd minor revisions are work in progress will have more experimental features and the API might break, use it and provide feed back so this can be improved, but avoid it in serious projects. -
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ADSBET
ADSBET - Auomated Determination of Salt-bridge Energy Terms
Program: ADSBET--Automated Determination of Salt-bridge Energy Terms Author:c)--Arnab Nayek, Parth Sarthi Sen Gupta, Shyamashree Banerjee, Sunit Das, Vishma Pratap Sur, Pratay Seth, Rifat Nawaz Ul Islam and Amal K bandyopadhyay* Department of Biotechnology,The University of Burdwan, India -
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fastCropper
Just shows, crops and stores an image!
My small c++ Project is based on the MIT license. It uses openCV and fltk to crop/copy an image region from an image (first parameter of the executable) and stores the image (input field). Why this program? I search very long for a small image-viewer with cropping function. I get only Gimp to do that on Linux, and it loads and stores not fast enough. Because there is fltk and openCV on Windows and Mac, it should be possible to compile it on other systems than Linux. UPDATE: Yes! I create a 32bit X86 Windows Version of fastCropper and a Make-Batch file, how I did it. ... -
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FRETtranslator
Translate smFRET trajectories into RNA secondary strucutures
...At its core it uses Viterbi-decoding. FRETtranslator combines smFRET data with RNA secondary structure predictions and RNA 3D structure sampling. As such it relies on input from additional software for RNA secondary structure and 3D structure predictions. -
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subnetcalculator
Basic subnet calculator written in Python.
Based on the IP address and subnet mask input from the user, the following values are calculated: #1. Network address #2. Broadcast address #3. Number of valid hosts #4. Wildcard mask #5. Number of mask bits (CIDR notation) #6. Random IP addresses from the subnet. -
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TE-locate
a tool for calling transposons
TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then. -
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BeanieCaptcha
A simple PHP-AJAX captcha application
BeanieCaptcha is a simple captcha developed with PHP - JavaScript. -
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TinyRenderer
A brief computer graphics / rendering course
Tiny Renderer (tinyrenderer by ssloy) is a lightweight educational software rasterizer that illustrates how OpenGL works by implementing a mini rendering pipeline in around 500 lines of code—serving as a compact, instructive graphics project. The final code consists of about 500 lines. My students typically require 10 to 20 hours of programming to start producing such renderers. The input is a 3D model composed of a triangulated mesh and textures. The output is a rendering. There is no graphical interface; the program simply generates an image. To minimize external dependencies, I provide my students with a single class for handling TGA files — one of the simplest formats supporting RGB, RGBA, and grayscale images. ... -
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...I mean memorize... long passages, whether scripture, poems, speeches, songs, or anything you care to remember. You just type the text, and if a word is correct it stays. Input any text file you like.
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A HID interface component for LinuxCNC/EMC. HID is USB speak for Human Interface Device, that is, input/output USB devices such as joysticks, gamepads, CNC pendants. This component was built to support devices that weren't handled by stock LinuxCNC/EMC components.
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xxe
Intentionally vulnerable web services exploitable with XXE
An XML External Entity attack is a type of attack against an application that parses XML input. This attack occurs when XML input containing a reference to an external entity is processed by a weakly configured XML parser. This attack may lead to the disclosure of confidential data, denial of service, port scanning from the perspective of the machine where the parser is located. This zipped Ubuntu VM is set up as a Capture the Flag with those that successfully exploit the XXE vulnerability able to place their name on a leaderboard. ... -
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JFlex
The fast lexer generator for Java
JFlex is a flex-like lexer generator for Java with emphasis on speed and full Unicode support. It has some not so usual features like negation in regexps and nested input streams. Also reads JLex specifications unchanged. -
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Facial Expression Recognition
Facial Expression Recognition System - Matlab source code
We propose an algorithm for facial expression recognition which can classify the given image into one of the seven basic facial expression categories (happiness, sadness, fear, surprise, anger, disgust and neutral). PCA is used for dimensionality reduction in input data while retaining those characteristics of the data set that contribute most to its variance, by keeping lower-order principal components and ignoring higher-order ones. Such low-order components contain the "most important" aspects of the data. The extracted feature vectors in the reduced space are used to train the supervised Neural Network classifier. ... -
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NewWeather3.112
Short Term Weather Forecast
You input the data from your local area and a short term Weather Forecast is produced. -
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Greyhound-Ubuntu : Trident
An all purpose Distro for Pentesters
Greyhound Trident is a GNU/Linux, Ubuntu based security distribution designed for penetration testing and cyber forensic investigations. It is a distribution designed for security enthusiasts and professionals, can also be used normally as your default OS. >>Based on Ubuntu 12.04.2 LTS (32bit ) user/pass : root/toor >>Kernel version 3.5.0-45 (little modified to make some of unsupported tools to work, but still will able to get Ubuntu updates ) >>2 Desktop environment : Gnome3,... -
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WigMaker
make wiggle file from bed file for ChIP-seq samples
This application takes bed file(or gzip bed, with .gz extension) as input, it creats a single file or a fold like 'wigs for xxx' in which the chromosome separated wiggle files will be saved. Users can set the wigextend value and step value for the output wig files. By default, they are 200 and 25. The application requires a lot of memory (about 2GB) -
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Intelligent Keyword Miner
Intelligent SEO keyword miner and predicing tool
THIS IS A NETBEANS 8.02 PROJECT ENGLISH ONLY This program was made to help me with the patent research. It simply generates the search keywords, based on your upvotes or a downvotes of the input parameters. It can accept a text or URL (text takes a prescedence over the URL). If you input URL, it goes to a page, and learns its text from HTML format. This program is intelligent as it predicts what you may want to search next, based on your personal trends. After searching the suggestions, you can choose to reset or train it further. ... -
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arduinounipwmlib
Small library for Arduino nano (only) for software PWM control
This is a library for Arduino nano for use in RC model building. It allows allows control of 8 PWM channels for LED or servo operation. Please note, that is is compatible with Arduino Nano and Arduino IDE 1.0x only. -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. ... -
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mouseOnStick is a UNIX / Linux (X11) tool which translates SDL joystick input to mouse movement, keyboard input and/or command execution.
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Tsunagi BPM Workflow Engine
Perfect Java Workflow Engine for BPM Applications
The Tsunagi-BPM is a Java-based workflow engine for BPM applications. Workflow components, Process models and nodes, are all allowed to be designed and developed in Java. You can build workflows with only HTML and Javascripts files.
