Search Results for "data analysis" - Page 71
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Showing 2661 open source projects for "data analysis"
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Honeyd2MySQL
Utility to move honeyd.log entries to a MySQL database.
This is yet another simple piece of software that extracts all the basic stats from honeyd’s text-based log files and inserts them in a MySQL database. Then you can run some queries and of course visualize the data if you want to. Many things are hardcoded or dead simple, but it does the job. The file is a modified version of “honeyd_importer” perl script originally writen by Joshua Gimer and shared through “honeypots” mailing list. -
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R Hadoop for Big Data
Download Free Associated R open source script files for big data analy
Download Free Associated R open source script files for big data analysis with Hadoop and R These are R script source file from Ram Venkat from a past Meetup we did at http://www.meetup.com/R-Matlab-Users/events/85160532/ Also, there is a long video and Powerpoint presentation slide PDF with R files at: http://quantlabs.net/blog/2012/11/how-to-use-hadoop-and-r-for-big-data-parallel-processing-free-download-pdf/ Download source files from http://quantlabs.net/blog/2012/11/download-free-associated-r-open-source-script-files-for-big-data-analysis-with-hadoop-and-r-rstats-hadoop/ -
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ossdpi
OSSDPI is collects information of the open source software.
OSSDPI is collects information of the open source software. And shows the information that is collected in a variety of ways. -
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SpiKeDeteKt
An automatic spike detection program to be used with new KlustaKwik
This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs... -
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Seurat
A sequence analysis tool for normal/tumor DNA and RNA data.
THIS IS NO LONGER THE HOME FOR SEURAT. PLEASE GO TO https://sites.google.com/site/seuratsomatic/ --- Seurat is an sequence analysis program for somatic mutation and allelic imbalance discovery in paired tumor and normal genome and transcriptome data. -
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MCPerm: Monte Carlo SNP permutation
Monte Carlo permutation method for SNP multiple test correlation
MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive, especially for genome-wide association study (GWAS). ... -
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AdPreqFr4SL
Adaptive Prequential Learning Framework
The AdPreqFr4SL learning framework for Bayesian Network Classifiers is designed to handle the cost / performance trade-off and cope with concept drift. Our strategy for incorporating new data is based on bias management and gradual adaptation. Starting with the simple Naive Bayes, we scale up the complexity by gradually updating attributes and structure. Since updating the structure is a costly task, we use new data to primarily adapt the parameters and only if this is really necessary, do we... -
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GLMNB
GLMNB: a shape-based peak calling tool for ChIP-Seq data analysis
This is the beta-version of a shape-based peak calling tool for ChIP-Seq data analysis. It is built using Generalized Linear Model with Negative binomial distribution. This tool accounts for the common peak shape, local variability of peak shifting distance and negative binomial background noise. -
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jmint
jMINT - Java Mutation for Integration Testing
jMINT is a integration fault injection tool which identifies data exchanges across classes and inject faults along those path. It is primarily based on the idea of program analysis and code mutation. The cross boundary data exchanges are identified by performing data flow analysis using java byte code analysis and transformation framework-soot. Mutant injection is also done via the soot framework. jMINT tool can be used to measure the effectiveness of integration test suites. -
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BroadData
Integrated to system status data based on the HDFS
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Analysis
Application to creating charts.
The goal of project is delivering useful and simple tools to creating charts. Functionality is provided by modules/plugins (OSGi technology). It allows you to create your plugins or customize Analysis application (by changing installed plugins in application). The Application, thanks to JAVA technology, is portable on the most operating system. In Files page you can find the application and also patches to its. -
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The pySpec project is a set of data analysis routines written in python for analysis of x-ray diffraction data produced by the SPEC X-Ray Diffraction and Data Acquisition software. This repo has moved to : https://github.com/stuwilkins/pyspec
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Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
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An Educational Toolbox on Data Communications, including Encoding Schemes, Bit-Error-Rate (BER), Noise and Spectral Analysis for Scilab
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Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
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cancergrid-tma
A web-based application for the management of tissue microarray images
...The application enables the user to navigate a grid of TMA core images within a slide, zoom and pan around an image, and enter a score constrained to a specific scoring system. The submitted scores are scored in the eXist open source database, in an XML format, which is compatible with existing TMA standards, and thus allow the data to be archived and re-used in future analysis. -
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ROOTlib
C++ lib, that provides access to multiple ROOT routines (root.cern.ch)
This C++ lib is used and created to provide easy methods based on ROOT (a CERN data analysis framework). It was developed for use in practical courses but is not limited to. In addition it is ported step by step into Python. -
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Plotmeister is a data exploration tool. It parses your ASCII data and generates a simple (text-based) table format. You can modify this table and eventually create nice looking figures.
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Port Authority
Gains basic data about FreeBSD ports install for forensics analysis
Tools for finding programs installed on FreeBSD image using the ports system and cleanly outputting information like modify, access, and change times. Can also be used to find the UID of the user that most likely installed the program and attempts to use passwd file backups to put a login name to that user. -
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ChEMBLspace
ChEMBLSpace explores the target-ligand network based on ChEMBL data.
ChEMBLSpace is a Java application for the visual exploration and analysis of the chemogenomic space extracted from the ChEMBL database. The space is defined as a network whereby the nodes correspond to proteins that have at least one ligand in common with other protein targets. The user can interactively select proteins and list their ligands and then iteratively design an activity profile by adding more targets or anti-targets to the selection and adjusting protein-specific activity... -
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Clusterfit
Show stellar evolution and open clusters in a color-magnitude diagram
This program is centered on a graphical Hertzsprung-Russell or color-magnitude diagram (CMD). It can show animated evolutionary tracks of stars of different masses, for a single star or a population of stars. In addition, it can show the CMD of a large number of existing open clusters, based on scientific survey data, and overlay isochrones (the curve in a CMD from stars born at the same time) to determine the age, distance and interstellar reddening of the cluster. Determining these... -
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SkyTracer is a desktop software intended for data collection in radioastronomical observations, as well as data collection for other uses. It's interface aims to be rich and easy to use. Data collection can be achieved by one of these devices: PICADC (free Microchip PIC solution developed by me [will make publicly available soon]), MC Measurement Computing (MCC) board or any Sound Card with Line In or Mic input (used for spectral analysis).
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median~
Calculates median of a signal
Pure Data external object to calculate the median of a signal.