Search Results for "script perl" - Page 7
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Showing 784 open source projects for "script perl"
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FetchYahoo is a Perl script that downloads mail from a Yahoo! account to a local mail spool. It downloads all parts and attachments and then deletes messages unless requested not to. It can also forward messages and repeat with a given interval.
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parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. ...
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FastAlign.pl
FastAlign is a perl script which uses the heuristic method of tfasty
FastAlign.pl provides a more intuitive output to find exon-intron junctions. The query string is in amino acids and the hit string is in nucleotides. There are extra nucleotides at the end of the hit string (option -diff and by default = 10), that allow to verify if the intron start with common rules (5'-GTGCGA-... for group II intron and after an exonic T for group I intron). If you have Emboss, you can genarate a graphic with option -graph 1. Dependencies: - Perl - Bioperl - UNIX... -
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Z spatial correction
A PERL script to perform spatial corrections on plate scores.
This script takes an input table with the following format: plate <tab> row <tab> column <tab> ORF <tab> score <tab> score etc... as many scores as you like. Please include column headings in the first row, particularly if you have many scores. Please ensure that you have saved the input table using a text editor that uses standard line breaks. Note that saving the file from excel often does not have standard line breaks. The first column heading must be the word "plate" (case not... -
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mendelFix
Correction of SNP Mendelian errors in trio data
mendelFix is a Perl script for checking Mendelian errors in genome-wide SNP data of trio designs. The program takes 12-recoded PLINK PED and MAP files as input, and calculates a series of summary statistics for Mendelian errors, sets as missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to infer missing genotypes using parent information. -
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latexdiff is a Perl script, which compares two latex files and marks up significant differences between them (i.e. a diff for latex files). Various options are available for visual markup using standard latex packages such as "color.sty".
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This is a firewall and an authenticated gateway script written in perl and bash translating rules to iptables and squid.
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ReferenceFree
Scripts for reference free genomic analysis
These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon. -
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env2
Convert environment variables between scripting languages
A unix perl script to convert environment variables between scripting languages. For example, convert csh setup script to bash or the other way around. Supports bash, csh, ksh, modulecmd, perl, plist, sh, tclsh, tcsh, vim, yaml, and zsh. Complements http://modules.sourceforge.net/ -
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AHT (Ashiyane Hack Tools Ver) 1.1
Perl Hacking Tools (BackTrack)
This is a perl script for hacking .. It Will make hacking easy for You .. It is For BackTrack This Script Contains This tools : Local File Disclource (LFD) Checker Scanning the whole netmask and returning IP and MAC BackConnect Tools Proxy Checker Reverse IP Add a User With Admin Access (Windows) Add a User With r00t Access (Unix) Grab Cpanel Users Remote Port Scanning With NetCat SQL Injection Scanner MD5 Hash Cracker (Online) Admin Page Finder Make Uploader With Echo Method (Linux Servers) Service Scanning BruteForce Services With Medusa And Hydra (Backtrack) Test Lfi With php:// Bypass Method Cms Analyzer (Beta Version) Server Scanning With Nmap Remote Command Execution Console Fck Editor Scanner -
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NRK opptak
Download video and audio from NRK.
Script to download video and audio from tv.nrk.no, radio.nrk.no, nrk.no/skole and www.nrk.no. See wiki for more info. -
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Web Man
A website manager
...Web Man is an open source partial work-alike for Microsoft Front Page (TM) or Web Expression (TM). Beginning with release Alpha 009, the download button downloads an installer script. Put the script where you want Web Man to run, become root, and execute the script with Perl. -
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Honeyd2MySQL
Utility to move honeyd.log entries to a MySQL database.
...Then you can run some queries and of course visualize the data if you want to. Many things are hardcoded or dead simple, but it does the job. The file is a modified version of “honeyd_importer” perl script originally writen by Joshua Gimer and shared through “honeypots” mailing list. -
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passphrase-generator
Generate a set of random passphrases for you to choose from.
Easy to use command line based strong passphrase generator. Implemented as a self contained perl script that should work on many unix like systems. The passphrase-generator defaults to only 3 words instead of the 4 suggested by XKCD, but uses a larger dictionary found in many unix like systems at /usr/share/dict/words. It also provides estimates for the entropy of the generated passphrases. The randomization is based on /dev/urandom and SHA1. -
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am_utils
Linux utils by AM
una serie di piccoli/grandi script e programmini di supporto alla vita linux e la sua shell. * acpiStat (visualizza stato alimentazione batteria e risorse memoria) * backup.sh (script bash di backup per partizioni LVM con supporto crittografia e backup incrementali) * makecd.sh e makedvd.sh (con un comando masterizza quello che ti pare!) * netload (aluta il carico di rete di una interfaccia) * title.sh (modifica il titolo della finestra xterm) * xinfo (usa osd_cat per visualizzare a... -
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check_backuppc_shares
Another Nagios plugin for BackupPC
This bash-script checks that backups are not too old, that the last backup had no errors, that all shares and subshares exist in the data root directory, etc. This plugin and the "check_backuppc" check sligtly different things, and in different was. You can use both... Tested on: BackupPC 3.2.1 / Ubuntu 12.04 Should work in most similar systems i think. Let me know otherwise (create a ticket!). Installation is easy: Just put the check-script inyour nagios server, and the other... -
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almtools
Collection of Open Source tools for HP ALM
Collection of Open Source and free tools to be used for HP ALM administration, customization, and also end-user usage. This is a community effort. Feel free to use, share and contribute back! -
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umlaute
This script corrects vowel mutation (Umlaut) errors in filenames
I have written this short script to correct vowel mutation (Umlaut) errors in filenames. This errors typically occur when you copy files to a system with UTF-8 charset from a system using another charset. One typical case is when a Windows-Client transfers files via FTP on a server using UTF-8. Such errors can't be corrected using convmv. -
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avestafonts
Avestan Unicode Fonts
The glyph outlines origin from Yasna 10 of the manuscript of Tehran University Library, nr. 11263. The scanned manuscript can be viewed under Ave976 on wwww.avesta-archive.com In the manuscript long [i] and long [u] do not differ, as well as both short and long [o]. Nevertheless, long [u] and short [o] are mapped in the font. Their outlines follow the script style of the manuscript. The letters for [θ] and [x] have two different shapes in the manuscript, so I have added one of each of... -
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Datenhangar ist ein Perl Directory Listing Script das seinen Dienst als Downloadbase effizient verrichtet. Dabei ist es simpel aufgebaut und doch kann man leicht mit etwas CSS Wissen, das Design leicht aendern.
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macls
Perl ls-like command shows mtime, atime, ctime for Linux
Pure Perl script that has the sole purpose of grabbing the atime, mtime, and ctime of a file or a bunch of files and outputting the results. M-A-C ls (macls) -
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iWatch2
A perl daemon to create a "timemachine" lookalike backup with Dirvish.
A perl daemon loosely based on iWatch, used to create a "timemachine" lookalike backup with Dirvish. iWatch2 is based on iNotify. The daemon can monitor (and exclude) various sets of directories - defined in an XML file - and calls a command or script after a preset time passed (eg, starts a Dirvish backup after 1 hour). Of course not limited to execute Dirvish commands. -
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Photo Viewer
Simple Perl Photo Viewer
Photo Viewer (pv0) is a script used to share photos collections over the Internet. It is meant to be used for users who have direct access to their web server and want an easy way to share photos. -
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The Amazon Products Feed script was created to provide a current listing of products on your site using Amazon's XML Web Services to provide links for your visitors to purchase these items on Amazon.com using your affiliate code in the URL.
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RICmerge
Improved Isobaric Label Reporter Ion Assignment
This script and underlying data are in support of the manuscript entitled "Improved reporter ion assignment of raw isobaric stable isotope labeled LC-MALDI-TOF/TOF MS/MS spectral data for quantitative proteomics". Authors: Thomas Jakoby, Andreas Tholey and Bart H.J. van den Berg* * = corresponding author bvdberg@live.com
