Search Results for "data fit" - Page 7
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Showing 217 open source projects for "data fit"
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EBprot
Bayesian Analysis of labeling-based Quantitative Proteomics Data
EBprot implements a hierarchical mixture model directly representing the peptide-protein map. The model fit is used to score differential expression of proteins in a (signed) probability scale based on reproducible quantification over multiple peptides. The package takes as input a data matrix with each row containing the data for one peptide, including protein and peptide identifier and peptide ratio(s), and returns the protein-level score table with PPscore, BFDR, Posterior Odds score, and flag for each comparison. -
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Coherent Logic USA Spending Client
Java client API for accessing the USA Spending Government web services
***** WARNING ***** The delivery of the 1.0.1-RELEASE of this framework will be the final source code commit that will be made on SourceForge; all further updates can be found at the following address: https://bitbucket.org/CoherentLogic/coherent-logic-usa-spending-client/ ***** WARNING ***** The USA Spending Client is a Java-based internal domain-specific language (DSL) for accessing the USASpending.gov web services. The API is designed to work with The Spring Framework and includes several examples to demonstrate how the components fit together. The domain model includes Java Persistence Annotations (JPA) for projects with requirements to persist data retrieved from the USASpending.gov website to a database. Also included with this API are data access objects to facilitate various persistence operations. -
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EPRI Open PQ Dashboard
Demos new techniques for extracting information from PQ data files
Data quality has been added so users can quickly see when meters are providing incomplete or invalid data. This dashboard currently accepts power quality data from COMTRADE and PQDIF standard file formats. Other proprietary software interfaces have been added. See the installation manual for more details. -
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New Terrain and 3D Map System
a very lightweight advanced terrain-rendering and 3D map rendering sys
A very lightweight advanced terrain-rendering and 3D map rendering system. Minimal dependencies: OpenGL, SDL. It's distrib in 2-3 separate modules: 1. the C++ implementation of the terrain- and/or surface- rendering Algorithms I have developed: both a multithread and a non-multithread variant is relaeased. 2. Seme as at point 1. , but with a road-network rendering and collision-detection module I wrote before. It also adds some trees at the top of the terrain. (multitread vesion not... -
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RStan
RStan, the R interface to Stan
RStan is the R interface to Stan, a C++ library for statistical modeling and high-performance statistical computation. It lets users specify models in the Stan modeling language (for Bayesian inference), compile them, and perform inference from R. Key inference approaches include full Bayesian inference via Hamiltonian Monte Carlo (specifically the No-U-Turn Sampler, NUTS), approximate Bayesian inference via variational methods, and optimization (penalized likelihood). RStan integrates with... -
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mysql2sqlite
converts mysql database to sqlite database using php, pdo or exe
Convert a mysql database to a Sqlite database. Includes two projects : A) A php script B) A windows executable, based on a python script Converts data, indexes and foreign key constraints. About the php script : -don't need a lot of memory -good speed Was projected to use on VDS/VPS. Usage: wget https://sourceforge.net/projects/mysql2sqlite/files/mysql2sqlite/download chmod +x mysql2sqlite ./mysql2sqlite About the Windows executable and the Python script : Usage : edit the in i file to fit your system, and just run the exe or the python script. -
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Scanned Image Extractor
Extract images contained in scans
...(see some hints on the link above.) Hint: **I NEED YOUR DATA**. If you have scans which won't be recognized well give me these (If they're not too personal etc - I won't use it for anything else than to improve this software). You might be interested in my other photography project (organize photographs and videos): https://sourceforge.net/projects/pivot-photo/ -
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Golden Cheetah
Cycling Performance Software for Linux, Mac OS X, and Windows
...Is available for Linux, Mac OS X, and Windows. Is released under an Open Source license. We believe that cyclists should be able to download their power data to the computer of their choice, analyze it in whatever way they see fit, and share their methods of analysis with others. The current production release is: 3.2.0 (2015-08-11 Files - 3.2.0) -
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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DynaSys
An easy-to-use dynamical systems modeler with great visualizations.
Just type in your difference equations, parameters, and variables and watch your dynamical system evolve. Examine a single path or an entire vector field. Change parameters and watch the effects in real time. Load and save models and data. Enter nullclines and Jacobians identification and classification of equilibria. Auto-generate fast C implementations of your model and fit them to data using Matlab, with optional GPU support. The long-term goal is to incorporate this into software that simulates whole neural networks. Note: This is a beta version, and there is currently no user's manual. ... -
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qtFit is a program used to fit ASCII data. The graphical user interface (GUI) of qtFit is designed using QT software. The regression is done using CERN’s MINUIT routine and plotting is perfomed with the QCustomPlot library. This document is a manual of the qtFit program, and includes instructions about installation, features description, and how-to-use examples.
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Binaly
A binary/hex editor which subdivides the file into sections which are
Binaly is a binary/hex editor which shows the whole file on a colorful strip. It subdivides the file into blocks of 1 Kib (1024 Bytes) and analyses them. It knows the following kinds of data sections: - Random binary data: The byte's average value is in [108, 148] and the standard deviation is in [60, 68]. - Text data: The average value is > 64 and the std. dev. < 40. - Homogeneous data: The std. dev. is < 2. - Other data section: The block doesn't fit into any of the categories above. ... -
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QA plugin for DITAOT
DITA Open Toolkit plugin that creates an HTML QA error report
This DITA Open Toolkit plugin identifies errors in DITA tagging, element nesting, language standards, and common syntax errors, many of which are based on the Microsoft Manual of Style for Technical Publications. The plugin produces a .dita file including all violation data, which is then rendered in HTML and .csv formats. Quality assurance checks are highly customizable to fit project needs. -
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XLogo4Schools
A Logo interpreter and programming environment specialized for schools
...It is a revised version of XLogo, published on http://xlogo.tuxfamily.org/. The Logo dialect is almost the same as Xlogo's, but some Logo commands were reimplemented to fit with the new programming environment and workspace. Some commands which were buggy in the original XLogo have been fixed. The interpreter works now more efficient due to the usage of more suitable data structures. The output of turtle graphics is now smoother and more appealing due to different rendering settings. Various features have been added to support better user experience and satisfaction in schools. ... -
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psignifit is a toolbox to fit psychometric functions and test hypotheses on psychometric data. This is version 3 which will now predominantly support python.
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Garmin Connect Python Uploader
A python script to upload .tcx, .fit, and .gpx files to Garmin Connect
This project, gcpuploader, helps you to upload files created by your Garmin fitness GPS (.tcx, .fit, or .gpx files) to the Garmin Connect web site (connect.garmin.com) once they are extracted from the device. It was developed because of Garmin's utter lack of support for Linux OS. This Python project has been tested in a limited capacity in Python 2.6.5 under Linux and Python 2.7.2 under Windows XP as well. **Tapiriik is an open source web service which syncs data between various sports GPS web sites as well as Dropbox. ... -
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Cognitive Stability and Flexibility FIT
GPU Accelerated Fitting of Behavioral Data by a Physiological Model
Using the NVIDIA-CUDA framework, mcmc_min is able to efficiently sample the Bayesian posterior distribution over the parameters of a physiologically derived model of a task-switching and distractor inhibition paradigm. The model features a working-memory module, implementing the currently active task rule in terms of a two-dimensional stochastic dynamical system with three attractor states (rule 1, rule 2, spontaneous). The working memory module is given inputs representing the task cue in... -
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TmStorage
Store multiple data streams in a single container
With TmStorage, you can store multiple data streams inside single container. It supports full transactions. You can use it as it is or you can easily create your own specialized storage derived from TmStorage while automatically gaining all features available in TmStorage (i.e. transactions). Create your own storage that fits your data, don't change your data to fit into some other storage. -
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Threadsafe C library for genetic optimisation (differential evolution) of data. Most often used for least squares fitting. But you can supply your own fit function and your own cost function.
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CURRENNT
CUDA-enabled machine learning library for recurrent neural networks
CURRENNT is a machine learning library for Recurrent Neural Networks (RNNs) which uses NVIDIA graphics cards to accelerate the computations. The library implements uni- and bidirectional Long Short-Term Memory (LSTM) architectures and supports deep networks as well as very large data sets that do not fit into main memory. -
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PMM-Lab Lite
Toolkit for Predictive Microbial Modeling
To install PMM-Lab Lite on Linux or Mac OS X follow the instructions at https://sourceforge.net/p/pmmlablite/wiki/Installation/. The Mac OS X version relies on an existing, 64 bit version of Java 6. Some of the things you can do with PMM-Lab Lite: • Import Data from XLS, etc. • Fitting primary / secondary models to data (two-step-fit) • Fitting global models to data (one-step-fit) • Using your own formulas (Formula Editor) • Do predictions with your models • Export results to XLS • Visualize and compare different models -
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miRNA Temporal Analyzer (mirnaTA)
Differential expression analysis tool for miRNAs in temporal studies
...It is implemented in Perl and R package (>= 2.13.0) and can be run across multiple platforms such as Linux, Mac and Windows. The mirnaTA requires that users provide data from a minimum of two time points and analyze up to 20 time points. To normalize data and remove technical variability, Normal Quantile Transformation (NQT) was used, and the normalized data is analyzed using linear regression model to locate any miRNAs which are differentially expressed in a linear manner. Any miRNAs with P-value<0.05 are considered statistically significant. ... -
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Scientific data elaborator
The data elaborator is a new project to manage scientific data
This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations. -
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EmulMultiFit
Simultaneously fit SAS data with polydisperse core-shell-shell spheres
Keywords: -simultaneously fit several SAXS and SANS data sets with polydisperse (Schultz-Zimm or Gaussian distribution f(R)) spherical core-shell-shell nanoparticles -analytical expressions are used for from factor F(Q) and its integral over f(R), no numerical integration required -absolute units -Mathematica is required via console (MathKernel) -Mathematica's local and global optimizers (simulated annealing, differential evolution, Nelder-Mead, ...) can be used -range for fit parameters and further constraints between fit parameters are possible -Monodisperse(!) ... -
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Tonto
Tonto - for Quantum Crystallography
.... ===== Tonto is a free library dedicated to quantum crystallography and quantum chemistry. It can refine crystal structures using ab initio wavefunctions. It can also fit electronic wavefunctions to X-ray diffraction data. === PLEASE READ BELOW === An updated release 3.1 (revision 3800) has been made in the Files part. Various linux executables have also been uploaded so you don't need to compile. For non-standard jobs, or for bug-fixes, get the latest version on branches/tonto-3.2 using subversion, like this: svn checkout svn://svn.code.sf.net/p/tonto-chem/code/branches/tonto-3.2 tonto-3.2 DO NOT check out the head, it is too unstable at the moment.
