Search Results for "data analysis" - Page 59
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Showing 2661 open source projects for "data analysis"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Seer
Seer is a multipurpose data analysis package for Monte Carlo data.
Seer is a multipurpose data analysis package for Monte Carlo simulation data, particularly for collider physics processes. Seer reads LHCO files and performs a variety of cuts and analyses on the data for either exploratory data analysis or reproduction of experimental studies. -
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GUItars
GUItars is designed for the analysis of high throughput RNAi data.
Please refer to the original article published in PLOS ONE at http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0049386. GUItars's user-friendly graphical interface enables rapid analysis of RNAi and small molecule screens. GUItars uses SSMD for hit selection, which is preferred for its ability to diminish sample size effects and the false hit rate, making it superior to other widely used HTS analysis methods. The program can handle the analysis for screens without... -
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Manipulation and analysis of psychophysiological data (e.g. peripheral physiology, EEG, MEG). This toolbox has a special focus on time-frequency approaches, including amplitude and phase-synchrony. Developer Project Home: http://www.ccnlab.umd.edu/Psychophysiology_Toolbox/
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
...To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs. -
Fully Managed MySQL, PostgreSQL, and SQL ServerCloud SQL handles your database ops end to end, so you can focus on your app.
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify abnormalities from RNAseq data: preprocess: Generates aligned and recalibrated BAM files. ... -
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OpenSearchServer Extractor
A RESTFul/JSON Web Service for text and metata extraction
An open source RESTFul Web Service for text , meta-data extraction and analysis. oss-text-extractor supports various binary formats: Word processor (doc, docx, odt, rtf) Spreadsheet (xls, xlsx, ods) Presentation (ppt, pptx, odp) Publishing (pdf, pub) Web (rss, html/xhtml) Medias (audio, images) Others (vsd, text) -
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Natural Language Analysis with Ngrams
NLP tool for statistical analysis of words, sentences, documents
Goal of this project is to have a NLP tool that would give statistical analysis results based on Google Ngram data. Furthermore, it is now just a NetBeans project without a final JAR. Furthermore, there will be a github version for anyone who wishes to contribute. In the future versions, user will be able to convert a single word to numerical data, to be able to compare two words and get the comparison data, and to be able to do the same for the sentences, paragraphs and documents. ... -
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Maxima Bridge System
A system to allow the interaction between Stata and Maxima
Maxima Bridge System is a collection of software programs that allows Stata to interface with Maxima so that Maxima can be used for symbolic computation to transfer data from Stata to Maxima and to retrieve results from Maxima. The cooperation between Stata and Maxima provides an environment for statistical analysis in which symbolic computation can be easily used together with all the facilities supplied by Stata. In this environment, symbolic computation algorithms can be used to manage the complexity of algebra and calculus, whereas numerical computation can be used when speed matters. -
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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AnomalyDetection
Anomaly Detection with R
AnomalyDetection is an R package developed by Twitter for detecting anomalies in seasonal univariate time series. It implements the Seasonal Hybrid Extreme Studentized Deviate (S‑H‑ESD) test, which reliably identifies both global and local outliers in data with trends and seasonality—commonly applied to system metrics, engagement data, and business KPIs. -
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WinDbgTool
Simplify managed dumps analysis.
Application acts as a host for Debugging Tools for Windows (WinDbg). Analysing memory dumps using WinDbg is rather complex in some cases. Tool is intended to automate such analysis for managed application dumps. WinDbgTool is also able to parse some WinDbg commands output and display results not using plain text but via grid control which can filter and sort data. -
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Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission. -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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ETU SQL for MySQL
Powerful tool for data analysis and editing
Changelog (Version 7 - Update 1) New Discard Partialy Changes New Edit Row in Window New List of User Connections New Show Image on Form New Quickly View of Cell Values Download also: 1) ETU SQL for MS SQL : https://sourceforge.net/projects/etusqltango/ 2) ETU SQL for Oracle: https://sourceforge.net/projects/etusqlfororacle/ 3) ETU SQL for DB2: https://sourceforge.net/projects/etusqlfordb2/ 4) ETU SQL for PostgreSQL: https://sourceforge.net/projects/etusqlforpostegresql/ -
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MICA-aligner
Next-generation sequencing short reads aligner based on Intel® MIC
Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. -
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math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net
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EXIMS
EXploring Imaging Mass Spectrometry data
EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. -
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CNV Explorer
Interactive Copy Number Analysis for Cancer Genomics
CNV Explorer for Gene discovery: https://arraycgh.shinyapps.io/CNV_Explorer/ CNV Explorer for survival analysis: https://arraycgh.shinyapps.io/CNV_Explorer_Survival/ CNV_Explorer is a data mining tool for cancer researchers interested in the structural and copy number changes that happen in cancer genomes. Huge volumes of genomics data from nearly every cancer type are now freely available and several online databases have begun to collate and store this information. ... -
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VADER
Lexicon and rule-based sentiment analysis tool
VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool designed for analyzing the sentiment of text, particularly in social media and short text formats. It is optimized for quick and accurate analysis of positive, negative, and neutral sentiments. -
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CIMS
Crosslinking induced mutation site analysis
This package includes the scripts to detect statistically reproducible crosslinking induced mutation sites (CIMS) and cross linking induced truncation sites (CITS) from HITS-CLIP data. References: Moore, M.*, Zhang, C.*, Gantman, E.C., Mele, A., Darnell, J.C., Darnell, R.B. 2014. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protocols, 9:263-293. Zhang,C.†, Darnell, R.B.† 2011. Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. ... -
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Ymap - Yeast Mapping Analysis Pipeline
Pipeline for large-scale genome changes analysis of genome datasets.
...The YMAP pipeline automatically illustrates genome-wide information in a single intuitive figure and is readily modified for the analysis of other categories of data and other pathogen species with small genomes. -
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CIPPEX is database application to manage potato and sweetpotato field and lab experiments as part CIP's (International Potato Center) research informatics toolset. It has facilities to create field books and facilitate subsequent data analysis.
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ckon
automatic build tool for ROOT data analysis software
ckon is a C++ program/tool which automatically takes care of compilation, dictionary generation and linking of programs and libraries developed for data analyses within the CERN ROOT analysis framework. This includes parsing include headers to figure out which libraries the main programs need to be linked to. It uses automake/autoconf to be platform independent and GNU install compliant. In addition, m4 macros are automatically downloaded and the according compiler flags included based on a list of boost libraries provided in the config file. -
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Chordalysis
Log-linear analysis (data modelling) for high-dimensional data
===== Project moved to https://github.com/fpetitjean/Chordalysis ===== Log-linear analysis is the statistical method used to capture multi-way relationships between variables. However, due to its exponential nature, previous approaches did not allow scale-up to more than a dozen variables. We present here Chordalysis, a log-linear analysis method for big data. Chordalysis exploits recent discoveries in graph theory by representing complex models as compositions of triangular structures, also known as chordal graphs. ...