Search Results for "data analysis" - Page 57
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Showing 2661 open source projects for "data analysis"
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circlize
Circular visualization in R
circlize is an R package for creating circular visualizations (plots laid out in circular coordinate systems) in a very flexible way. It implements many types of plots using circular layouts: chord diagrams, circular heatmaps, arcs/links between sectors, genomic data visualization, etc. It provides low-level drawing functions as well as high-level functions to build complex visualizations. It’s often used in genomics, network analysis, or other fields where relationships among categories or entities can be nicely displayed in a circular fashion. Support for circular heatmaps, multiple tracks (rings), for showing multiple layers of data per sector. ... -
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MetTailor
MetTailor: Dynamic Block Summary and Data Normalization for Robust Ana
Mass spectrometry-based quantitative metabolomics (LC-MS or GC-MS) requires accurate peak alignment and adaptive normalization, both of which have known limitations in the current data extraction software packages. MetTailor is a software package that performs post-extraction processing steps such as cross-sample realignment and data normalization that are specifically designed to account for the experimental factors from chromatographic separation and MS analysis. The two major components are: (1) A dynamic block summarization method for peak intensity data to correct mis-aligned peak features across the samples, significantly alleviating the missing data problem... -
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FMFilter
Fast Model Based Variant Filtering Tool
Filtering out the prominent portion through the excessive amount of information produced by next generation techniques is a challenging task. Current tools enable to analyze next generation sequencing data in various methods. However, there is still need for fast, easy to use and efficacious tools. We provide an efficient filtering tool for next generation sequencing data produced by genetic disease studies. FMFilter allows to choose one of the inheritance models (recessive, dominant,... -
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MathOCR
A scientific document recognition system
MathOCR is a printed scientific document recognition system. MathOCR is still in the pre-alpha stage, recognition result may not be good enough for practical purposes. MathOCR is a printed scientific document recognition system written in pure Java. MathOCR has the functionality of image preprocessing, layout analysis and character recognition, especially the ability to recognize mathematical expression. MathOCR can work do not depends on other OCR software. -
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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GenoSuite is a framework developed for proteogenomic analysis. An updated GenoSuite2 is just released where FDRScore (Jones et al. Proteomics 2009) based strategy is used to integrate results from multiple search algorithms. Prokaryotic Proteogenomic Tool(PPT) is developed as a part of GenoSuite framework. PPT is for finding novel translations in prokaryotic genomes and is dependent on Mass Spectrometry based proteomics data and related genome sequence.
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Savsoft Quiz v2.0
Savsoft Quiz is an Open Source Quiz Management Web Application
Savsoft Quiz v2.0 is a php based open source web application to create and manage online quiz, test, exam on your website. To read terms and condition please visit: http://savsoftquiz.com/ -
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CoGA
R package for differential co-expression analysis
CoGA (Co-expression Graph Analyzer) is an R package to identify differentially co-expressed gene sets between two phenotypes. The software infers gene regulatory networks from gene expression data, and compares structural properties of the inferred networks based on their spectrum distributions. It also compares the networks in terms of their gene centralities, clustering coefficients and shortest path lengths. In addition to the differential co-expression analyses, the tool provides graphical interfaces for network visualization, ranking of genes according to their "importance" in the network, and the standard single gene differential expression analysis. -
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EXMARaLDA stands for "Extensible Markup Language for Discourse Annotation". It's a system of concepts, data formats and tools for the computer assisted transcription and annotation of spoken language, and the analysis of spoken language corpora. This project's source code has moved to https://github.com/Exmaralda-Org/exmaralda
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This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
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An online platform for emotion analysis, classification and risk perception analysis in social media data. The platform is a step further towards bridging the gap between: Emotion classification and analysis on one side, and risk perception dissemination analysis on the other side. The platform core values are: - Open source - Ease of use - Extensibility and flexibility
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LDhat
Estimate Recombination Rates from Population Genetic Data
LDhat is a package written in the C language for the analysis of recombination rates from population genetic data. This package has migrated to github: https://github.com/auton1/LDhat -
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Copy Number Explorer
Interactive Copy Number Analysis for Cancer Genomics
Deployed online at: https://arraycgh.shinyapps.io/Copy_Number_Explorer/ https://arraycgh.shinyapps.io/Copy_Number_Explorer_Survival/ Copy Number Explorer is a data mining tool for cancer researchers interested in the structural and copy number changes. Huge volumes of genomics data from nearly every cancer type are now freely available and several online databases have begun to collate and store this information. However, current tools focus on individual gene queries rather than... -
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SWAT
Security Workflow Analysis Tool
The Security Workflow Analysis Tool (SWAT) is a platform for modelling and analyzing workflows. It comes with ananlysis approaches to search for data leaks in workflows. -
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ESBTL (Easy Structural Biology Template Library) is a lightweight C++ library that allows the handling of PDB data and provides a data structure suitable for geometric analysis and advanced constructions.
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FreeROI is a versatile image processing software developed for neuroimaging data. Its goal is to provide a user-friendly interface for neuroimaging researchers to visualize and analyze their data, especially in defining region of interest (ROI) for ROI analysis.
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iSBatch
Hyearchical Data Processing Plugin for ImageJ
iSBatch is a Java-based plugin for ImageJ (version 1.49d) or its distribution Fiji. iSBatch is designed for quick evaluation of analysis pipelines and visual exploration of datasets. It is distributed under an open open-source license (GNU General Public License, version 3). The plugin handles the data in a hierarchical fashion based on a source folder containing all data and little guidance provided by the user. The software is designed for rapid exploration of large datasets and it includes an internal SQLite database (http://sqljet.com/) for convenience. -
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Cookie Cruncher For Chrome
Cookie Cruncher is an easy way to remove all cookies in Chrome.
Cookie Cruncher For Chrome is a simple, quick and effective way to safely delete all cookies in Chrome with a single click. Here is our VirusTotal link: https://www.virustotal.com/en/file/01266a35134fa5f4b687cfb91b6e84967f659a23b8435e60bef8bbe114e8fd1b/analysis/1438536098/ Note: Jiangmin and Zillya both flag the software as malicious, but this is a false positive and is to be expected, only 2 out of 55 antiviruses flag the software as "malicious". We think this is because our software accesses certain program locations in order to delete cookie data, and the idea of a "delete" command sets off alarm bells in the antivirus software. ... -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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Tushare
TuShare is a utility for crawling historical data of China stocks
Tushare is a Python library that provides access to a wide range of financial data focused on the Chinese stock market. It allows users to retrieve real-time and historical market data, financial reports, index data, and macroeconomic indicators. Tushare is widely used in quantitative trading, data analysis, and academic research. It supports both free and premium data tiers via Tushare Pro, which requires an API token. -
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bisReadMapper
Software for dealing with DNA methylation sequencing data
Fast and lightweight package for analysis of bisulfite converted DNA sequencing reads from the Illumina sequencing platform. -
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MSCViewer
A tool for visualization and analysis of logs as sequence diagrams
MSCViewer is a tool intended for debugging of control flows in concurrent, distributed systems. The tool loads logs generated by various entities in the system and visualize a sequence diagram chart for events and interactions. The diagram is fully interactive: entity can be added/removed from the diagram and shuffled; events can be filtered, searched, highlighted and annotated with comments. MSCViewer features integration with a Python interpreter which allows writing Python scripts... -
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PEANuT
A Cytoscape plugin for pathway enrichment analysis
PEANuT is a Cytoscape 2.8.3 plugin for pathway enrichment analysis. PEANuT utilizes data from the following databases: - ConsensusPathDB - PathwayCommons - WikiPathways The version for Cytoscape 3.x is available via http://sourceforge.net/projects/peanutv3/ A publication is currently in preparation. PEANUT is designed to work in concert with the VIPER and COMFI plugins. -
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LightProfiler
Profiler for Oracle extended SQL trace files
LightProfiler – application for performance analysis of the Oracle databases. It generates detailed resource profile for extended SQL trace files (10046 event), containing information about consuming of response time (by events, by cursors, etc.), data files usage, error analysis (SQL, PL/SQL) and much more. Also it contain tools for additional processing of trace files (extract session data, splitting files) and for management of database's sessions (disconnecting, tracing, monitor parameters, blocking locks, events and etc.) -
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SEPIA: Security-oriented PN Framework
Petri net framework for security related modeling and reasoning.
SEPIA provides implementations for various types of Petri nets. Along Place/Transition-nets, it supports Petri nets with distinguishable token colors and defines coloured workflow nets, where coloured tokens are interpreted as data elements used during process execution. To support information flow analysis of processes, SEPIA defines so-called IF-Nets, tailored for security-oriented workflow modeling which enable users to assign security-levels (HIGH, LOW) to transitions, data elements and persons/agents participating in the process execution. SEPIA builds upon TOVAL (http://sourceforge.net/p/toval), JAGAL (http://sourceforge.net/p/jagal) and SEWOL (https://sourceforge.net/projects/jawl/). ...