HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
jDip is a tool for mapping, managing, and adjudicating Diplomacy games. It has a simple but powerful graphical interface, with a richly customizable map display. Windows, Linux, Mac OS X, and Solaris are supported. Over 25 variants are supported.
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Enrich and query corpora in the TEI-XML vocabulary. CorpusReader manage very large corpora and corpora containing milestone annotation. It provides tools for enriching corpora with output of linguistic parsers, and for extracting quantitative information
Testar is a tool that reduces testing time for large Java unit test suites. It runs on top of JUnit and automatically selects individual tests to execute based on changes made to your code since the previous tool invocation.
A program to calculate and create lists of possible variations (permutations) and selections (combinations) of a given set of elements. Creating the cartesian product of two sets is also possible.
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Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
Open Song Composer is a free/open source music generator written in Java that learns through use of a genetic algorithm. It can generate music in all major modes.
Cougar Squared is a new Java library for machine learning and data mining research, supporting research needs of the community. It is written by researchers for researchers. It extends the WEKA and YALE machine learning frameworks.
This project is a maven plugin for Apache Lucene. Using it, a Lucene index (configuration inside a xml file) can be created from different datasources ( file/database/xml etc.). A Searcher Util helps in searching the index. Use Lucene without coding.
This is a simple Brick Breaker game developed in java using swings. This my first game, so please bear with me for bugs and omissions if any. Please make suggestions if any.
How to deploy:
1)Download the .rar
2)Unrar to a folder
3)Run command "java -jar <location of .jar>"
How to play:
Press Enter to start. Use arrow keys to move the pad sidewise. Press space for pad-jump.
[2014-10-31] This project is obsolete, for latest version (6.1.3) see GitHub https://github.com/digital-preservation/droid (source) and http://www.nationalarchives.gov.uk/information-management/manage-information/preserving-digital-records/droid/ (binary)
DROID (Digital Record Object Identification) is an automatic file format identification tool. It is the first in a planned series of tools developed by The National Archives under the umbrella of its PRONOM technical registry...
Volta is a suite of development tools for distributed, hard real-time systems. It includes Cascade, a control flow analysis tool for Java, and Clepsydra, a worst-case execution time analyzer. Also included is a Clepsydra plug-in for jEdit.
Patu Digua is a web obfuscator for HTML, CSS and JavaScript files. It features command line and graphical interface. It is very easy to integrate into web applications.
It is built in Java.
GiraffeFTP is a Java based FTP client and server. It includes GUI and command line tools. Good code to see to understand the FTP Protocol and sockets. Also includes a non-standard implementation of SSL sockets.
Gdatafs is a FUSE implemtation that mount your account at google's picassa web to your filesystem. The filesystem support ful read/write and delete of album and photos.
Xuse manages requirements, use cases & other artefacts that drive software design. Xuse focuses on clear documentation & communication. It defines an XML data model for requirements & use cases with XSLT providing multiple derived views: HTML/SVG/PDF.
Note there is no GUI for entering requirements, however another project (https://sourceforge.net/projects/xguse/) will provide a GUI.