Search Results for "assembler" - Page 5
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Showing 370 open source projects for "assembler"
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Metalasm is a classic meta-assembler for the generation of horizontal microcode for microcoded state machines. Meta assemblers has been used to design computer hardware (cpus, disk controllers, io controllers etc). Metalasm uses the Haskell fp language.
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Opera
An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads. An updated version called OPERA-LG has been re-engineered with features for the assembly of large and complex genomes. -
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GNUSim8085 is a simulator and assembler for the Intel 8085 Microprocessor. For downloading latest release please head to the website - https://gnusim8085.github.io/ For source code - https://github.com/GNUSim8085/GNUSim8085
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GFinisher
genome assembler finisher, gap, gap close, sort contig
GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffolds with genomes references. contact dievalg at gmail.com -
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Lilac - a Java assembler
An assembler and disassembler for the JVM (Java Virtual Machine)
Lilac is a tool suite, which contains an assembler and a disassembler for the JVM (Java Virtual Machine) bytecode. The assembler takes textual representations of Java classes, written in an assembler-like syntax, and converts them to binary Java class files, which can be loaded into JVM. The disassembler takes binary Java class files and creates out of them assembler files suitable for the assembler. -
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SWAP-Assembler
A scalable and fully parallelized genome assembler
There is a growing gap between the output of new generation massively parallel sequencing machines and the ability to process and analyze the sequencing data. We present SWAP-Assembler, a scalable and fully parallelized genome assembler designed for massive sequencing data. Intend of using traditional de Bruijn Graph, SWAP-Assembler adopts multi-step bi-directed graph (MSG). With MSG, the standard genome assembly (SGA) is equivalent to the edge merging operations in a semi-group. Then a computation model, SWAP, is designed to parallelize semi-group computation. ... -
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SAT-Assembler
Scalable and accurate targeted gene assembly for large-scale NGS data
SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms. -
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Hex File Loader
A software for upload .hex files to ATMEGA328P and compile .asm files
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Relaunch64
Relaunch64 is a program (text-editor) for C64-asm-coding.
Relaunch64 is a program (text-editor) for asm-coding on Windows, Mac and Linux, written in Java. This editor works together with common crossassembler like Kick Assembler, ACME or c64tass. Beside the typical texteditor-features, Relaunch64 offers special syntax highlighting, user-defined scripts for compiling and running sources, easy navigation through all opened source code files, auto-completion and much more... -
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Celera Assembler (CA) is a whole-genome shotgun (WGS) assembler for the reconstruction of genomic DNA sequence from WGS sequencing data.
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EV3Utils
LEGO EV3 Utilities and Assembler
EV3Utils are Communication and Assembler utilities written in JAVA for working with the LEGO Mindstorms EV3 from Linux. A command line interface is provided which can be used to up- or download projects as well as assemble new bytecode files. Communication with the brick is currently limited to USB-only, but other transports should be easy to add. The assembler supports all of the functionality of the one provided by LEGO, but uses a slightly different syntax and supports far more error checking. ... -
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JWasm
Japheth's assembler, JWasm
JWasm is a free MASM-compatible assembler with these features: native support for output formats Intel OMF, MS Coff (32/64-bit), Elf (32/64-bit), Binary, Windows PE (32/64-bit) and DOS MZ. precompiled JWasm binaries are available for DOS, Windows and Linux. For OS/2 and FreeBSD, makefiles are supplied. Instructions up to AVX are supported. JWasm is written in C. The source is portable and has successfully been tested with Open Watcom, MS VC, GCC and more. -
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DNA Scissor is new software which provides users with a set of easy-to-use tools to perform several operations mainly: quality trimming, vector masking, vector-like contaminants removal, and repeats identification.
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EasyPowoliX64
An assembler language emulator to lean it easily!
This is a simple simulator of a simple form of Assembler. An assembly language (or assembler language) is a low-level programming language for a computer, or other programmable device, in which there is a very strong (generally one-to-one) correspondence between the language and the architecture's machine code instructions. You will get into the coding with assembler with this easy form of assembler language. -
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BASE
a fast and accurate de novo genome assembler for longer NGS reads
BASE is developed for assembly of longer NGS data especially for HiSeq and MiSeq data. Deeply sequenced small genomes and large genome are all could be assembled well. You can also find the files in github: https://github.com/dhlbh/BASE -
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This an open source console-based simulator for both the Motorola EXORciser M6800 development system and the SWTPC 6800 computer system. It runs in Linux or Windows under Cygwin. Debugger, assembler, disassembler and MDOS filesystem included.
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stm8mu
Assembler and linker for STM8 microcontrollers.
Set of tools for programming STM8 microcontrollers, including assembler, linker and flashing tool via integrated bootloader. -
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Minux
Lightweight General Purpose Linux Distribution
Lightweight/Minimalist general purpose Linux distribution based on TinyCore Linux Minux is loaded with FLTK and GTK based applications JWM - Window Manager FlaxPDF - PDF Reader Rendera - Painting Program Dillo - Web Browser FLBurn - Burning Software Fluff - File Manager FlPicsee - Picture Viewer Flgames - FLTK Games XMMS - Audio Player MtPaint - Image Editor And much more Compiler/Interpreter/Assembler also available ISO Image only 24 MB -
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Tiny player (up to 3 kb) for Jescola's Buzz. Includes Klatt speech synth (experimental). First release in 64k intro Yo-08 which took first place on Paradox 2002. C-version was created to be ported to assembler.
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SPA
SPA: a short peptide assembler for metagenomic data
...A nucleotide assembly-based strategy does not fare much better since metagenomic assemblies are typically very fragmented and also leave a large fraction of reads unassembled. We present a method for reconstructing complete protein sequences directly from NGS metagenomic data. Our framework is based on a novel Short Peptide Assembler (SPA) that assembles protein sequences from their constituent peptide fragments identified on short reads. We also present a new implementation of SPA based on suffix array (SFA-SPA) which runs significantly faster than SPA. Youngik Yang, Cuncong Zhong, and Shibu Yooseph* J. Craig Venter Institute, San Diego, CA {yyang,czhong,syooseph}@jcvi.org * Corresponding author SPA is available in binary on 64 bit Linux OS. ... -
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miRLAB
miRLAB: an R package for exploring miRNA-mRNA regulatory relationships
...The package provides a complete set of pipelines for testing new methods and analysing new expression datasets. miRLAB includes a pipeline to obtain matched miRNA and mRNA expression datasets directly from The Cancer Genome Atlas (TCGA, based on TCGA Assembler), the benchmark computational methods for inferring miRNA-mRNA regulatory relationships, the functions for validating the predictions using miRNA experimentally validated target data and miRNA transfection data, and tools to compare the results from different computational methods. -
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Structured Macros for 8051
Structured programming in 8051 assembler
Allows the use of structured programming in assembler -
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armgba
GBA ARM Assembler
ARM assembler with FASMARM, Flat Assembler, GameBoy Advance -
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fasmwm
FASM Windows Mobile Preview
Created with FASMARM assembler.
