Search Results for "binary analysis tool" - Page 43
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Showing 1963 open source projects for "binary analysis tool"
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QuickNXS
Polarized ToF reflectivity raw data analysis tool
Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps. -
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BIRAP
Bacterial Intergenic Region Analysis Pipeline
BIRAP (Bacterial Intergenic Region Analysis Pipeline) is an open source, easy to use Perl pipeline that can be used to re-annotate bacterial genomes using experimental data. The tool integrates expression profile derived from RNA-seq and/or proteogenomics, compares it with existing in silico annotation and helps validate annotation, identify novel protein coding regions, putative non-coding RNA as well as help correct er-rors in the existing annotation. -
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The B compiler is a tool able to parse B models, and perform syntaxic and semantic analysis. It can also be used as a library, linked to applications manipulating B models (cross referencer, code generator, documentation generator, etc.). The most recent source code is available at https://github.com/CLEARSY/BCOMPILER
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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Analyzer for Files
A tool to look into file contents
Analyzer for Files (AoF) is a tool to look into file contents, analyze the structure with installed plug-ins, and show the results with several split windows including converted data and a tree if successful. It was designed as a workbench with a core and plug-in extensions. It can handle the normal plain-text file and data, complex binaries supported with the corresponding plug-ins. What's more, the developers can deploy and release their own plug-ins according to the plug-in developing... -
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MicrobeGPS
The Explorative Taxonomic Profiling Tool for Metagenomic Data
MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily. -
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
...These challenges are similar but not identical to the challenges arising in the analysis of metagenomic samples and require specific solutions. pipasic (peptide intensity-weighted proteome abundance similarity correction) is a tool which corrects identification and spectral counting based quantification results using peptide similarity estimation and expression level weighting within a non-negative lasso framework. pipasic has distinct advantages over approaches only regarding unique peptides or aggregating results to the lowest common ancestor. -
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JITTAC
Just-In-Time Tool for Achitecture Consistency
JITTAC is an Architecture Consistency plug-in for Eclipse that helps maintain consistency between the architectural design and the implementation. It detects the potential problem areas by a method based on Reflexion Model (jrmtool) and prompts the developer accordingly. For a fuller description, please see the website. -
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OpenSearchServer Extractor
A RESTFul/JSON Web Service for text and metata extraction
An open source RESTFul Web Service for text , meta-data extraction and analysis. oss-text-extractor supports various binary formats: Word processor (doc, docx, odt, rtf) Spreadsheet (xls, xlsx, ods) Presentation (ppt, pptx, odp) Publishing (pdf, pub) Web (rss, html/xhtml) Medias (audio, images) Others (vsd, text) -
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Amald
An app that's designed to monitor appengine urls to see if they are un
An app that's designed to monitor appengine urls to see if they are under lockdown. This relies on the host machine already having the gcloud tool installed and configured. It assumes it can simply request a list of projects for the actively set config on the host machine. *Note* you must have a config.yaml properly configured for this to work (and in the same directory as the binary). Please read the README here: https://github.com/pemcconnell/appengine-authstatus -
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This is a Java based tool which assists in the preparation of token files for multivariate analysis in Goldvarb.
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ArchNURBS
NURBS-based elastic and limit analysis of masonry arches in MATLAB
ArchNURBS is a MATLAB tool for the analysis of planar curved structures, with a particular attention to masonry arches. As in CAD softwares, the geometry of the model is defined by a NURBS representation of the structure. Indeed, the user can upload geometries imported from a CAD environment. Based on such a representation, ArchNURBS performs the elastic isogeometric finite element analysis and the collapse limit analysis of the structure. -
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Natural Language Analysis with Ngrams
NLP tool for statistical analysis of words, sentences, documents
Goal of this project is to have a NLP tool that would give statistical analysis results based on Google Ngram data. Furthermore, it is now just a NetBeans project without a final JAR. Furthermore, there will be a github version for anyone who wishes to contribute. In the future versions, user will be able to convert a single word to numerical data, to be able to compare two words and get the comparison data, and to be able to do the same for the sentences, paragraphs and documents. ... -
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WinDbgTool
Simplify managed dumps analysis.
Application acts as a host for Debugging Tools for Windows (WinDbg). Analysing memory dumps using WinDbg is rather complex in some cases. Tool is intended to automate such analysis for managed application dumps. WinDbgTool is also able to parse some WinDbg commands output and display results not using plain text but via grid control which can filter and sort data. -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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VADER
Lexicon and rule-based sentiment analysis tool
VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool designed for analyzing the sentiment of text, particularly in social media and short text formats. It is optimized for quick and accurate analysis of positive, negative, and neutral sentiments. -
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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Ymap - Yeast Mapping Analysis Pipeline
Pipeline for large-scale genome changes analysis of genome datasets.
The active use repository has migrated over to: https://github.com/darrenabbey/ymap The repository here was errantly created with some large binary files included. Attempts to extract the files from the history here have failed. A copy of the history was successfully scrubbed and then hosted at github. -------- Eukaryotic pathogens have complicated and dynamic genomes. To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of heterozygosity (LOH) events in Candida albicans, the most common human fungal pathogen, we developed a pipeline for analyzing diverse genome-scale datasets from microarray, deep sequencing, and restriction site associated DNA sequence experiments for clinical and laboratory strains. ... -
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CCH
A genetics tool that identifies genomic regions of shared ancestry
Combinatorial Conflicting Homozygosity (CCH) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry. The associated publication regarding CCH may be accessed... -
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SignalDiagrams
Digital/Analog signals visualization tool
A JavaFx 8 educational application that will let you visualize digital and analog signals from a binary input and let you export the chart in SVG (Everything is in progress). Digital: Bipolar, CMI, NRZ-L, NRZ-M, NRZ-S, Manchester, Manchester differential, Miller, MLT-3, pseudoternary, RZ, Unipolar. Analog: Phase, Frequency, Amplitude. -
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Bahasa Patch
A tool to create and apply xdelta-based patches
xdelta is a binary patching program written by Josh McDonald, implementing the VCDIFF delta compression standard. This GUI was made in order to make xdelta more easy to use. This GUI was primarily made to be used by the Fansub to apply new fixed release version of anime subbed without send full file. Developer site http://nusantara-project.blogspot.com/ -
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Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
