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A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.
Pure XSLT 1 based formatting of bibliographies and citations in DocBook XML documents. Bibliographic data can be accessed either from a real RefDB database, or from an XML data file.
deegree is a Java framework for geospatial software based on the specifications of the OpenGIS Consortium and the ISO. The focus is based on the realisation of OGC specified web services. It is developed in cooperation between lat/lon and the University of Bonn.
The code released on this software project site is the result of the mGBL-project (www.mg-bl.com). Around 30 researchers have joined forces to research and develop new forms in emotional and playful learning methods triggered by mobile phones.
Software tools for building interactive information visualization applications. Prefuse supports a rich set of features for data modeling, visualization, animation, and interaction for both Java (prefuse) and Flash (prefuse flare).
Modyna is an open source application to model dynamic systems and simulate their behaviour. Modyna lets you define a system visually. It automatically builds the equations to simulate the systems behaviour. Simulation results are shown as graphs.
APoDIx is a Portable Bio-Database Index system. It retrieves biological database information from the website of Oxford Journals, save them in a local position, and provides a viewer for display and search the information.
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A four-tier web application that allows for easy, graphical querying of the WordNet lexical database of the English language (built by Princeton University) in its SQL form. It resorts to EJB and servlet technology.
primedb is a project that attempt to generation prime numbers fast and saving them to a database(Mysql or else) for prime research: finding large number of prime,prime factorization,Goldbach's conjecture,twin prime conjecture...
XAnswer project is aimed to coordinate efforts in development of different components of XQuery processing engines by means of "standard" API, specifications and protocols.
Datamixer generates mock data values for various datatypes, including integer, floating precision, datetime, and string. It can generate complex sequences, based on functions and permutations of the basic data series.
This project is a java web application developer toolbox. It is among other, a simple and powerful framework which does not require dealing with XML files. It also provides a lot of other features, such as a DB abstraction layer, a nice javadoc doclet, a
epoline® PHOENIX (ePHOENIX) is a document and dossier management system developed to support the process of handling Intellectual Property-related documents.
BioSunMS, a flexible software platform for submission, management, retrieval of sample and MS data(MALDI or SELDI), and clinical proteomics-related statistical analysis. BioSunMS integrated all functions into a user-friendly desktop RCP application.
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
Muradora aims to develop a web front-end for Fedora repository and to re-factor Fedora's authentication and authorization into pluggable middleware components.
Project37 is a model-driven software application that uses an XML schema to generate security services which can be used to alter GUI forms or XML data sets.
This is an open source, Java-based LoST server/client reference implementation by Columbia University. Our LoST server runs as a Java Servlet on Apache-Tomcat web application server with PostgreSQL + PostGIS.
Interrelated multimedia contents is often stored in a large number of diverse, distributed and incompatible data sources. The goal of the MediaSpaces project is to provide software components to enable integrated access to these sources.
SURFnet IDS, a Distributed Intrusion Detection System (D-IDS). The goal is to provide an early warning system which lets system administrators correlate known and unknown exploits to attacks directed towards their networks.
openADAM is a web-based database management system for the large amount of genotype data generated from the Affymetrix GeneChip® Mapping Array and Genome-Wide Human SNP Array platforms