Search Results for "mpi" - Page 4
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Showing 186 open source projects for "mpi"
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MasQu
Finite-differencing on the sphere
MasQU is a code for calculating derivatives on grids with regular or irregular pixel distributions, using finite differences. Particularly, it is constructed to perform tensor-mode separation on the HEALPix spherical grid, but can be generalized. -
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Distributed Multithread Apriori (DMTA)
A parallel implementation using MPI and OpenMP to Apriori algorithm
DMTA (Distributed Multithreaded Apriori) is a parallel implementation of Apriori algorithm, which exploits the parallelism at the level of threads and processes, seeking to perform load balancing among the cores. Was implemented in C++ language, using the parallelization libraries OpenMP and MPI. The algorithm was generated as a result of a project developed by André Camilo Bolina, under the guidance of teachers Marluce Rodrigues Pereira, Ahmed Ali Abdalla Esmin and Denilson Alves Pereira, in Department of Computer Science at Federal University of Lavras. The results of this project were published in the Revista de Sistemas de Informação da FSMA and is available in http://www.fsma.edu.br/si/edicao11/FSMA_SI_2013_1_Principal_1.html -
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Computational Fluid Dynamics (CFD) solver aimed to solve multi-physics problems on unstructured grids (inviscid Euler, Navier-Stokes flows, Heat transfer). F90 based. MPI, cgns, Metis libraries used.
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Ray: scalable assembly
Ray -- Parallel genome assemblies for parallel DNA sequencing
de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard. -
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allink
Software for data analysis, image processing, simulations, solver.
...DrImage) image manipulation on the Matematica filters. The program is intended to use as less as possible external libs (optional: openGL, gsl, fftw, cgal, png, tiff, boost, MPI, Qt...). -
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mdtest is an MPI-coordinated metadata benchmark test that performs open/stat/close operations on files and directories and then reports the performance.
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MPI Baccarat Game
MPI Baccarat Game
This is a baccarat game application developed in java 1.7 version with swing interface. It is developed by the gaming lab (MPI-GERDC). This game is aimed for students in MPI Bachelor of Science in Computing programme to study the gaming specialist. This simulation will help students to learn the baccarat game rules, logic, and test the betting systems of their own. -
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PCramer
Dense linear solver utilizing Cramer's rule in parallel
This code provides a linear solver based on a parallel application of Cramer's rule. The programming was done in 'C' leveraging the MPI-CH2 libraries for message passing between nodes. This implementation is for dense linear systems and all calculations are done with doubles. -
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Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
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LSE_Solver
System of linear equations solver
LSE_Solver is a program that solves system of linear equations using MPI library in c language. -
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PMGR_COLLECTIVE defines a protocol and an API designed to enable MPI jobs to startup in a flexible, scalable manner. This library enables MPI processes to exchange information with each other through a series of collective operations.
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KDT provides domain experts with a simple interface to analyze very large graphs quickly and effectively without requiring knowledge of the underlying graph representation or algorithms. It provides a Python interface and can run on clusters.
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OMPISpecto
OpenMPI tool for monitoring openMPI applications
Open MPI application monitoring (and steering) from a web-interface and a mobile device. -
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ViennaX
A flexible plugin execution framework for scientific computing in C++
...A plugin system allows to wrap already available functionality into reusable components, which can have data input and output dependencies via a socket system. Different scheduler kernels are available, supporting serial and MPI-based distributed executions, supporting task and data parallelism. -
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SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint / restart capability for MPI codes.
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SPSens
Stochastic parameter sensitivity analysis for chemical networks
...Additionally the package includes basic stochastic simulation algorithms. The package includes several example networks which can be easily modified for other networks. Serial and parallel MPI implementations can be built and called from the command line. The serial implementation of the package can also be called from Matlab via the MEX interface with limited functionality. It supports many user specified options, including the use of antithetic sampling that can be used in some cases to increase efficiency. -
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DecGPU: CUDA-based Error Correction
The first distributed and parallel short-read error corrector on GPUs
DecGPU (Distributed Error correction on GPUs) is a parallel and distributed error correction algorithm for large-scale short read assembly. It is implemented using CUDA C++ and MPI, running on a GPU cluster. -
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MPICH2: A high-performance implementation of Message Passing Interface (MPI) standard (both MPI-1 and MPI-2)
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OptLib
C nonlinear optimization library
[PROJECT MIGRATED TO GIT-HUB] OptLib is a library of nonlinear optimization routines focused on the use of stochastic methods, including Simulated Annealing, Genetic Algorithms, and Monte Carlo. Routines are parallelized using MPI. -
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LIME
LIME is a software tool for creating multiphysics simulation codes.
The Lightweight Integrating Multiphysics Environment for coupling codes (LIME) is a small software package for creating multiphysics simulation codes. LIME is intended to be especially useful when separate computer codes (which may be written in any standard computer language) already exist to solve di fferent parts of a multiphysics problem. LIME provides the key high-level software (written in C++), a well defi ned approach (with example templates), and interface requirements to enable the... -
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This project is a tool for beginners to understand why a MPI program works or doesn't. It aims simple MPI codes, with a modest number of Processes. It is a real time view of an executing code, providing help even when the program deadlocks.
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Extract and append variables in parallel from a NetCDF file. Uses combine-batched asynchronous I/O with Parallel-NetCDF 1.2. Arena memory is managed to prevent swapping and fragmentation. Allows header padding, variable alignment and 64bit format.
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MPM-GIMP is a parallelized implementation of the Material Point Method [Sulsky 1994,1995] and Generalized Interpolation Material Point method [Bardenhagen 2004] written in C++ with MPI, Scons and Python.
