Search Results for "binary analysis tool" - Page 30
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Showing 1961 open source projects for "binary analysis tool"
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...To measure the entire set of PTMs across diverse proteomes, software must overcome the dual challenges of covering enormous search spaces and distinguishing correct from incorrect spectrum interpretations. Here, we describe TagGraph, a computational tool that overcomes both challenges with an unrestricted string-based search method that is as much as 350-fold faster than existing approaches, and a probabilistic validation model that we optimized for PTM assignments. We applied TagGraph to a published human proteomic dataset of 25 million mass spectra and tripled confident spectrum identifications compared to its original analysis. ...
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TARGT pipeline
Targeted Analysis of sequence Reads for GenoTyping of HLA/MHC genes
...The pipeline also requires installed versions of the mapping tool Bowtie2 and samtools. -
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WandaHOT
a termination analysis tool for higher-order term rewriting systems
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retrap
Open-Source intelligence tracking and analysis tool.
(OSINT) Open-Source intelligence tracking and analysis tool. - Disclaimer: This tool is experimental in its Alpha phase. It's developed and published as a small building block of a master's thesis research. So use it for educational purposes only and at your own discretion, the author cannot be held responsible for any damages caused. -
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Harmonia is a tool for analyzing music scores exported to MIDI or MusicXML format. It allows you to detect voices inside a single MIDI track (eg. live piano recording), main themes (and their motifs), harmonic key and chord interpretation.
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PasCop
Static code analysis for Freepascal
PasCop is a tool for static program analysis of Object Pascal source codes. It helps to comply with the principles of Clean Code Development and supports the developer in creating readable source code. -
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VStar
Multi-platform Variable Star Visualisation and Analysis
VStar is a multi-platform, easy-to-use variable star observation visualisation and analysis tool. Data can be read from a file or the AAVSO database, light curves and phase plots created, period analysis performed, and filters applied. Plugins can be developed, e.g. to make additional observation sources available. See also: 1. http://www.aavso.org/vstar-overview 2. http://www.aavso.org/forums/about-aavso/vstar 3. http://dbenn.wordpress.com/category/astronomy-science/vstar 4. http://www.citizensky.org/teams/vstar-software-development -
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Newsvendor Model Simulation Spreadsheet
Excel Spreadsheet Model for Single Period Inventory Problems
...Data analysis and decision making. Cengage Learning. Hill, A. V. (2011). The newsvendor problem. White Paper, 57-23. Lawrence, J. A., & Pasternack, B. A. (2002). Applied management science. Willey, Chichester. Microsoft. Office Dev Center (2017). Excel performance: Improving calculation per -
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PHPCorrector
XSS and SQLi vulnerabilities corrrector for PHP web applications
PHPCorrector is a tool that scans your PHP code to find Cross-Site Scripting (XSS) and SQL Injection (SQLi) vulnerabilities. When a vulnerability is found, it is corrected automatically. -
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MoPAC
The Modular Pipeline for the Analysis of CRISPR screens
To facilitate the comparison of gene essentialities in two or more cell samples, we propose MoPAC (Modular Pipeline for Analysis of CRISPR screens), a Shiny-driven interactive tool for differential essentiality analysis in CRISPR/Cas9 screens. For installation and usage instructions please refer to the wiki page. -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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TauFactor
MatLab App for calculating the tortuosity factor of microstructure
Please contact the author at sjc08@ic.ac.uk for any questions or if you wish to cite this application in a academic study. Journal paper available here: http://www.sciencedirect.com/science/article/pii/S2352711016300280 TauFactor is a MatLab application for efficiently calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. The tortuosity factor quantifies the apparent decrease in... -
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rq
A tool for doing record analysis and transformation
...It was created with love out of the best parts of Rust, and is distributed as a dependency-free binary on many operating systems and architectures. -
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seqdiva
SeqDivA:Sequence Diversity Analysis
Sequence Diversity Analysis - SeqDivA version 1.0 is a python-based tool with a friendly GUI designed for Linux and Mac OS. Utility: Run alignment algorithms (water, needle, and blast) to compare all-vs.-all protein, DNA, and RNA sequences. SeqDivA provides similarity, identity, and bit-score matrixes and dot plots to explore/illustrate the diversity (homology degree) of the sequences, enabling the delimitation of the twilight zone. -
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SVPhylA
SVPhylA: Sequence Vectorization for Phylogenetic Analyses
SVPhylA is a python tool for the calculation of several alignment-free distances for phylogenetics analysis from the most popular alignment-free approaches. Such alignment-free methods basically encode DNA and protein sequences (fasta files) into numerical vectors allowing the calculation of alignment-free distances which may be combined into a consensus/compromise matrix by using algorithms like DISTATIS based on Multidimensional Scaling (MSD), Lineal Principal Component Analysis (PCA) and PCA-Kernel (non-lineal). ... -
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qlogtimeliner
Your application log analysis tool.
This tool helps with analysis multithreaded logs by visualising log events on a timeline. It is user responsibility to create rules for log parsing in actionscript (like JavaScript) You need to have latest Qt sdk installed in order to build it from source code. -
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Mass-Up
MALDI-TOF data analysis tool
Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data. -
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Miasm
Reverse engineering framework in Python
...Its layout does not always totally conform with a reverse engineering “ideal view”, so please be tolerant of those odd graphs. Miasm is not the first tool to implement this feature. But, well, as the tool already had everything needed to implement DSE, it was just a matter of time before these features landed in the main branch. -
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Unused
A command line tool to identify unused code
Unused identifies unused code in Rails, Phoenix, and other types of applications, improving developer productivity. By default, unused leverages a different memory allocator called mimalloc. For my local benchmarks, it speeds up execution by a significant amount (which is documented in the commit introducing mimalloc), but currently runs into sporadic issues on Apple M1 devices. If you run into issues with segmentation faults, consider reinstalling unused with the stock Rust allocator. It is... -
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Phenalysis
Analyze agronomic plant research plots in aerial orthomosaic images.
A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on... -
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Tweet analysis/querying - Team Burton
A tool for analyzing tweets and querying them. (University Project)
A CSV files and Tweet parser. With this project, you can easily analyse some tweets and extract datas from these tweets in order to make charts, tables. -
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MCNPydE
MCNP data extraction and display software library
MCNPydE is a Python library for extracting data from MCNP output file. It requires Python, Matplotlib and Numpy. It is a data reduction tool for MCNP output for ease of results analysis and viewing. -
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Web Security Audit
Passively audits the security posture on current page for your browser
The goal of this project is to build an add-on for browser that passively audits the security posture of the websites that the user is visiting. Assume that the tool is to be used on non-malicious websites, currently not under attack or compromised. Add-on wants to report security misconfigurations, or failure to use best security practices. - Add-on tries to analysis the commonly vulnerable setting of servers: lack of use of security-relevant headers, including: - strict-transport-security - x-xss-protection - content-security-policy - x-frame-options - x-content-type-options It is available for Opera Beta and Developer browser - https://bit.ly/2TvvFw4 -
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Evol2Circos
Tool for Synteny Analysis using MCScanx and Visualization using Circos
Evol2Circos provide a tool based user-friendly platform to analyse user specific data for synteny construction and visualization, and a web based platform to facilitate the browsing of the syntenic information of different fish species using Circos plot, bar, dual and dot plot. The information generated from Evol2Circos can also be used for further downstream analysis. -
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bluehair2_gl02
GL02_sujet B A tool to help analyze mails
The consulting firm UIConsult wishes to have a tool to help analyze the communications of its teams of collaborators. This analysis is produced in a report form called Rcom. General speaking, this program will be able to read a large number of communication data, create graphs and export them to help the team leader produce the RCom.
