Search Results for "graph" - Page 29
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Showing 1425 open source projects for "graph"
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PRIMUS
Pedigree Reconstruction and Identification of a Maximum Unrelated Set
NEW: Download new version with Pedigree Reconstruction at primus.gs.washington.edu This versions is outdated and incomplete. Please visit the new website for the complete version of PRIMUS. We present a method adapted from graph theory that always identifies the maximum set of unrelated individuals in any dataset, and allows weighting parameters to be utilized in unrelated sample selection. PRIMUS reads in user-generated IBD estimates and outputs the maximum possible set of unrelated individuals, given a specified threshold of relatedness. Additional information for preferential selection of individuals may also be utilized. ... -
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SEWOL: Security-oriented Workflow Lib
Java Library for workflow handling
...SEWOL uses and encloses the following libraries: - TOVAL (http://sourceforge.net/p/toval), - JAGAL (http://sourceforge.net/p/jagal), - OpenXES (http://www.xes-standard.org/openxes/), - Spex (http://code.deckfour.org/Spex/) - Google Guava (https://github.com/google/guava), - xstream (http://xstream.codehaus.org/) and - graph-impl and visualization components of Jung 2 (http://jung.sourceforge.net/). Documentation: http://doku.telematik.uni-freiburg.de/sewol -
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mahasona
Mahasona engine is an open source game engine.
Mahasona Engine is a Game engine written on top of OpenGL renderer. Currently no official release but svn repository version. Includes an example application. Find the wiki page for howto's Ubuntu Video http://www.youtube.com/watch?v=y5OSCTb_aNA Windows Video http://www.youtube.com/watch?v=dS_YwzyCjn4 Projects using Mahasona Engine- 1. Snap-n-fold: origami pattern generation based real-life object structure http://dl.acm.org/citation.cfm?id=2223800 -
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MSPDebug is a free debugger for use with MSP430 MCUs. It supports FET430UIF, eZ430, RF2500 and Olimex MSP-JTAG-TINY programmers. It can be used as a proxy for gdb or as an independent debugger with support for programming, disassembly and reverse eng
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Vrigazov Chess Engine
Chess engine, currently in development
Basic chess engine with implemented rules and DFS search in the graph of positions. -
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RPi-Monitor
Real time monitoring : RPi-Monitor always keep an eye on your computer
RPi-Monitor is a monitoring tool which keep an eye on your computer and can give you the current status and the history of resources usages in a nice looking and interactive web interface. RPi-Monitor is design to be light and powerful and doesn't relies on other software to run. It has been deigned to run on embedded device and consume very few system resources. -
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Digital Spork Game Engine
Cross platform 2D/3D game engine written in C++11 & OpenGL ES 2/3
Alpha: - Still in heavy development, but should be stable enough for use in small projects. - Features include OpenGL ES based scene graph system, sound (static and streaming), input handlers, scheduler, async job queues, and much more. - Supported platforms include iOS, Android, OSX, Linux, Windows, HTML5 (Emscripten). -
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SplitMEM
Graphical pan-genome analysis with suffix skips
With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. Here we introduce a novel O(n log n) time and space algorithm called splitMEM, that directly constructs the compressed de Bruijn graph for a pan-genome of total length n. To achieve this time complexity, we augment the suffix tree with suffix skips, a new construct that allows us to traverse several suffix links in constant time, and use them to efficiently decompose maximal exact matches (MEMs) during a suffix tree traversal. -
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sWangTiler
A java implementation that generates wang tiles from any input image.
...Kim in "Efficient Texture Synthesis Using Strict Wang Tiles". In order to calculate the lowest cost path between any edge- and sample image an implementation of Dijkstra's algorithm is used which was found in the java graph library 'JGraphT'. Credits to all mentioned parties and to http://www.texturemate.com/. -
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StatCode
Stat cvs/svn Code Change
It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. -
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A graph-based procedural texture editor to create 2d seamless textures for real-time rendering applications.
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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hbgm
'Hierarchical Bond Graph Modelling of Biochemical Networks'
Scripts and supplementary data for the manuscript 'Hierarchical Bond Graph Modelling of Biochemical Networks': Peter J. Gawthrop(1), Joseph Cursons(1,2), and Edmund J. Crampin(1-4). (1) Systems Biology Laboratory, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia. (2) ARC Centre of Excellence in Convergent Bio-Nano Science, Melbourne School of Engineering, University of Melbourne, Victoria 3010, Australia -
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ISO GrAF
Experimental Java library for reading and writing GrAF/XML files.
The Graph Annotation Framework (GrAF) models linguistic annotations using a data model based on Graph theory and algorithms. The GrAF standard is a work product of ISO TC37SC4 Working Group 1. This Java library is NOT part of the GrAF standard and standoff annotation files produced by the library may not be GrAF compliant. -
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SOAPdenovo2
Large-size genome de-novo assembler
What's next of SOAPdenovo2: MEGAHIT is the formal successor of SOAPdenovo2 MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph http://www.ncbi.nlm.nih.gov/pubmed/25609793 https://github.com/voutcn/megahit Latest Code on GitHub: https://github.com/aquaskyline/SOAPdenovo2 SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. ... -
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Ladder Functions
Private Release of Graph Statistics using Ladder Functions
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SERAM: Security Reasoning Framework
Framework for security-related definition and reasoning.
The content of SERAM has been moved to the security-oriented workflow library SEWOL: https://sourceforge.net/projects/jawl/ SEARM provides support for the definition of access control policies, such as ACLs and RBAC models. Additionally, it allows to specify inference policies and comprises techniques for reasoning about inferences and information distribution along a set of inference rules. -
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DynamicRoots
Software for the Reconstruction and Analysis of Growing Plant Roots
This is a software platform for reconstructing and analyzing the growth of a plant root system from a time-series of 3D shapes. It aligns the shapes with each other, constructs a geometric graph representation together with the function that records the time of growth, and organizes the branches into a hierarchy that reflects the order of creation. The software includes the automatic computation of structural and dynamic traits for each root in the system enabling the quantification of growth on fine-scale. -
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mapgraph
Massively Parallel Graph processing on GPUs -- now part of Blazegraph
Mapgraph is SYSTAP’s disruptive new technology to exploit the main memory bandwidth advantages of GPUs. The early work was co-developed with the University of Utah SCI Institute and has its pedigree in the UINTAH software running on over 750M cores on the TITAN Super Computer. Today, SYSTAP has commercialized this technology into it’s Blazegraph Accelerator and Blazegraph HPC products. Checkout our options for GPU acceleration of graphs or contact us to learn more: ... -
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Graffy
Graph Library based on C++ making heavy use of templates and STL
Graffy is a open source Graph Library written completely in C++ in self contained fashion. Features: 1. Reading and Writing from multiple graph formats. 2. Basic Graph Traversal, Connected Components and Paths 3. Centrality Measures 4. Community Detection Algorithms both Global and Local and measures to evaluate community detection algorithms 5. Artificial Graph Generators -
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Open PHIGS
PHIGS (Programmer's Hierarchical Interactive Graphics System)
...The reason for doing so is that today every graphics card manufacturer provides their own OpenGL implementation, which takes full advantage of the accelerated drawing capabilities in the hardware. PHIGS is a higher level API than OpenGL that works with a hierarchical scene graph. Models are built up in a Centralized Structure Store (CSS), a database containing the drawing primitives and their attributes (color, line style, etc.). CSSes cand be shared among a number of views, known under PHIGS as a workstation. PHIGS is defined by the ISO standards ISO/IEC 9592 & 9593. Open PHIGS provides a library for C. -
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AP3/3SUM
Multimedia asset management and manipulator for Étoilé
3SUM aims to provide a powerful 2 to 3D programmable environment that allow editing several kind of contents and linking the relationships among Objective-C type. 3SUM sits on the top of AP3 framework which consit of 3D screen graph Objective-C API, C++ geometry math classes, basic mesh implementations, raster compositor and thread managements. AP3 also have a few foundation classes for data manipulation purpose, such as AAObject root which allows tagging object with selector-keyed arbitrarily typed bytes, or AAChunk, an equal-entry array which allows managing two or more binary streams as a single multi-field stream, or striding one stream into some, and some other partitioning abstractions. ... -
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Aqualid
General purpose build system
General purpose build tool. Key features: Flexible and scalable for large projects Dynamic dependency graph Batch build support Distributed build scripts (no fixed project structure) Support any build target types (files, strings, URLs, remote resources etc.) Conditional options Scons like build scripts (but don't compatible)
