Search Results for "binary analysis tool" - Page 28
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Showing 1960 open source projects for "binary analysis tool"
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Semantic Segmentation Editor
Web labeling tool for bitmap images and point clouds
A web-based labeling tool for creating AI training data sets (2D and 3D). The tool has been developed in the context of autonomous driving research. It supports images (.jpg or .png) and point clouds (.pcd). It is a Meteor app developed with React, Paper.js, and three.js. -
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dnaasm
set of tools for NGS data analysis
genome de novo assembler for next generation sequencing data, tool to link contigs by long DNA reads -
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GelJ
GelJ is a Java program for the analysis of DNA gel fingerprints images
GelJ is a Java application designed for analysing DNA fingerprint images. GelJ is a feather-weight, user-friendly, open-source and free tool that combines the simple design of free systems with instrumental features for DNA fingerprinting that are only available on commercial tools. Some of the outstanding features of GelJ are functionality for accurate lane- and band-detection, several methods for computing migration models and generating dendrograms, comparison of banding patterns from... -
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DisPC – a large scale disorder prediction and analysis tool which is a meta-predictor in one hand and also performs a proteome wide analysis of function, binding region prediction and evolutionary conservation analysis of the intrinsically disordered proteins (IDPs). DisPC is tested in several bacterial and fungal genomes for detailed genome wide analysis of IDPs. This pipeline can be used for large scale identification and characterization of IDPs in different domains of life.
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ModST
A tool to search post-translational modifications in a blind mode
ModST (pronounced as modest) is a tool to search post-translational modifications (PTMs) in mass spectrometry data in an unrestrictive manner. It can search for hundreds of modification without any user provided information for variable modifications. Due to data level parallelization implemented through perl it is fast, portable and easy to use to identify and analyse PTMs in MS/MS data. -
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Jojos Binary Diff
Binary Diff and Undiff Utility
JDIFF is a program that outputs the differences between two binary files, either in binary format or in human readable format (detailed or summarized) and then allows to reconstruct the second file from the first one and the diff-file. -
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Config Tool
a GUI for configure glftpd and zipscript-ng/backupscript settings
Let you configure settings for glftpd such as user permissions and provides some special programs for backup files from glftpd server as well as uploaded ones. -
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MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
...MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome variability and disease-associations for mitochondrial variants. MToolBox provides also a Variant Call Format file (version 4.0) featuring, for the first time, allele-specific heteroplasmy. ... -
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Ceka
Crowd Environment and its Knowledge Analysis
A knowledge analysis tool for crowdsourcing based on Weka. We also have a Python version of Crowdsourcing Learning: CrowdwiseKit on GitHub (https://github.com/tssai-lab/CrowdwiseKit). -
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pg_statsinfo
Pg_statsinfo is a utility that monitor statistics and the activity.
...pg_statsinfo : https://github.com/ossc-db/pg_statsinfo pg_stats_reporter : https://github.com/ossc-db/pg_stats_reporter ------- pg_statsinfo is a utility that monitors statistics and activities of PostgreSQL. pg_statsinfo is easily installed then periodically stores snapshots, which consists of activity information of PostgreSQL server and some information about system resources, into repository. These snapshots are visually examined using pg_stats_reporter, dedicated web-based visualization tool for pg_statsinfo. The tools make health checking or activity analysis of server easier for PostgreSQL DBAs. ------- pg_statsinfo project has been moved here from pg_foundry. -
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lpsolve
Mixed Integer Linear Programming (MILP) solver.
Mixed Integer Linear Programming (MILP) solver lp_solve solves pure linear, (mixed) integer/binary, semi-cont and special ordered sets (SOS) models.lp_solve is written in ANSI C and can be compiled on many different platforms like Linux and WINDOWS This project is moved to github: https://lp-solve.github.io/ -
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VFOS is a versatile and fast tool for selecting optimal subset of oligonucleotide sequences (barcodes), which uses penalty scores five barcode factors (GC contents, homopolymers, simple sequence repeats with repeat unit of dinucleotides, Hamming distances, and complementarity between barcodes) with appropriate their weights to select optimal barcodes. Final output barcodes can be used in identification of true variants with very low allele frequency less than or equal to 1% existing in liquid biopsy from cancers, quantitative transcriptome analysis to estimate accurate expression levels of genes or transcripts, and even single-cell sequencing of large cell populations. ...
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AGELESS
Software for systematic study of Parents and their hybrids
NGS technology although has its obvious advantages, poses serious bioinformatics challenges in analyzing and extracting meaningful information. Plenty of tools have been developed for the analysis of NGS data that are mostly catered towards diploid genomes. Despite such a rich tool set, it is difficult to improvise and use them on genomes which are aneuploid. We were also handicapped by the lack of suitable analytical pipeline that allows studying the experimental hybrids systematically. We therefore addressed this issue by developing a novel Java based suite of utilities called AGELESS. -
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Neural Networks Collection
Neural Networks Collection
This project implements in C++ a bunch of known Neural Networks. So far the project implements: LVQ in several variants, SOM in several variants, Hopfield network and Perceptron. Other neural network types are planned, but not implemented yet. The project can run in two modes: command line tool and Python 7.2 extension. Currently, Python version appears more functional, as it allows easy interaction with algorithms developed by other people. -
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tcptrace
tcptrace analyzes packet tcp connections and provides analysis
...It can also produce a number of graphs for further analysis. -
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CODON SOFTWARE
The dataset and codon project files are available here.
...Over the years, numerous pipelines and computational tools have been developed aiming to automate this task and assist researchers in gaining knowledge about target genes of study. However, even with these technological advances, manual annotation or manual curation is necessary. To assist with this problem, we present CODON, a tool for the prediction, annotation, and manual curation of genomic data. This software makes use of a finite state machine in the prediction process and automatically annotates products based on information obtained from the Uniprot database. CODON is equipped with a simple and intuitive graphic interface that assists with manual curation, providing the user with decision making abilities throughout the analysis including in identity, length of alignment, and name of the organism in which the product obtained a hit. -
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NLP.js
An NLP library for building bots
...Natural Language Processing Classifier, to classify an utterance into intents. NLP Manager, a tool able to manage several languages, the Named Entities for each language, the utterances, and intents for the training of the classifier, and for a given utterance return the entity extraction, the intent classification and the sentiment analysis. -
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Open Source Data Quality and Profiling
World's first open source data quality & data preparation project
This project is dedicated to open source data quality and data preparation solutions. Data Quality includes profiling, filtering, governance, similarity check, data enrichment alteration, real time alerting, basket analysis, bubble chart Warehouse validation, single customer view etc. defined by Strategy. This tool is developing high performance integrated data management platform which will seamlessly do Data Integration, Data Profiling, Data Quality, Data Preparation, Dummy Data Creation, Meta Data Discovery, Anomaly Discovery, Data Cleansing, Reporting and Analytic. ... -
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IPFS Publish
Continuous Delivery of static websites to IPFS
This is a tool that aims to enable the automatic publishing of static webpages from Git repositories into IPFS. It consists of two parts: a small web server and management CLI. Web server exposes an endpoint that you use as your Git's webhook. When the hook is invoked, it clones your repo, build it (if needed), add it to the IPFS node (pin it if configured) and publish the new IPFS address under configured IPNS name. -
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sreplace
Command line tool to replace quickly strings in files.
Command line tool to replace quickly strings in files. Replaces recursively in directories, handles huge files, accepts regulars expression patterns, can replace binary chunks... -
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OpenFrames
Real-time interactive 3D graphics API for scientific simulations
...A simulation developer can use OpenFrames to specify what they want to visualize, without having to know any details of computer graphics programming. OpenFrames is currently used by three NASA programs: Copernicus (NASA JSC), the General Mission Analysis Tool (GMAT, NASA GSFC), and a Virtual Reality exploration tool (NASA GSFC). -
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Pain2D are programs which were developed for the automated pain drawing collection and classification of diseases on the basis of pain drawings in pen-and-paper and digital form for research purposes. Pain2D is currently not a diagnostic tool, but is aimed at scientists, physicians and anyone interested in the automated analysis of pain drawings.
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RED HAWK
All-in-one reconnaissance and vulnerability scanning toolkit for sites
RED HAWK is an open source command-line security tool designed for information gathering, vulnerability scanning, and web reconnaissance tasks. It combines multiple scanning and analysis capabilities into a single toolkit to help security researchers and penetration testers quickly analyze a target website. It can collect a wide range of information about domains, servers, and web applications, including network details, hosting configuration, and content management system detection. ... -
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Metrix++
Management of source code quality is possible.
The project has been moved to https://github.com/metrixplusplus/metrixplusplus ______________________ Metrix++ is an extendable tool to collect and analyse code metrics. - Multiple languages supported - Multiple metrics available - Configurable. Every metric has got 'turn-on' and other configuration options. There are no predefined thresholds for metrics or rules. You can choose and configure any limit you want. - High-performance. Processes thousands of files per minutes. -... -
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surpriver
Find big moving stocks before they move using machine learning
surpriver is a machine learning project designed to identify unusual stock market activity that may precede large price movements. The system analyzes historical stock price and volume data to detect anomalies that could indicate potential trading opportunities. By applying machine learning techniques to market indicators, the tool attempts to identify patterns in trading behavior that deviate significantly from normal market activity. These anomalies are interpreted as signals that a stock...
