Search Results for "cluster" - Page 27
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Showing 938 open source projects for "cluster"
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parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. A patch for the structure (ran.c) is also provided in order to correct the generation of the seed number.
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HADOS
High Availability Distributed Object Storage
HADOS is a server software for storing files in a cluster of server. The goal is to handle high availability by storing copy of the same file on several nodes. HADOS provides RESTFUL APIs to easily store, check or retrieve files. Using the powerful cluster APIs you can retrieve the files whatever the node that hosts it. To avoid any single point of failure, it is possible to apply a request to any node of the cluster, there is no master node. -
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The Cluster Administration Package (CAP) means to ease integration, configuration, and systems management. It is the "glue" that allows administrators to leverage existing technologies in a framework of information management, control, and installa
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iBRAIN2 Workflow Manager
A system for automated analysis and data handling for RNAi screens
The iBRAIN2 software system for RNAi high-content screening integrates automated analysis and customizable data management. It enables robust and complex parallel processing on computer cluster infrastructure and allows for reliable storage of primary and resulting data sets. -
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A java framework for simulating mobility models in mobile Ad-Hoc networks MANET. This simulator can generate mobility traces for various mobility models, in many formats, resimulate, evaluate, create Excel diagram, cluster, generate form base on XML.
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IMPORTANT: The project moved over to github! You can find it at: https://github.com/exhuma/python-cluster
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A parallel-programming framework for concurrently running large numbers of small autonomous jobs, or microthreads, across multiple cores in a CPU or CPUs in a cluster. Each microthread is conceptually similar to a task in Ada and it is much lighter weight than an operating system thread. SpikeOS was designed to handle millions of microthreads, for example in a neural network hosting millions of spiking model neurons. SpikeOS handles microthread scheduling, synchronization, distribution and communication. *** This project has been forked. ...
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This is a toolkit to help developer to install hadoop cluster on hiCloud VMs. Note: hiCloud is the Amazon EC2 like service provided by CHT, Taiwan.
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RNA CoMPASS
RNA CoMPASS is a web-based GUI distributed computational pipeline.
RNA CoMPASS, a web-based GUI distributed computational pipeline, provides all-in-one functionality including human transcriptome quantification and the typical endogenous RNA-Sequencing analysis along with the investigation of exogenous sequences. RNA CoMPASS is deployable on either a local cluster or a grid environment managed by PBS submission. -
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WaveSorter
A powerful, versatile tool for offilne spike analysis and sorting
...Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform properties (width, etc.) can be saved to disk in simple text files. WaveSorter is written in C++, utilizes the GNU Scientific Library for all computation, and is highly parallelized; on modern hardware it can handle files containing several 100,000s of waveforms per channel with almost no noticeable loss in GUI fluidity and <1sec lags for files with >1,000,000 waveforms per channel. ... -
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Webkosa
Webkosa is the open source edition of Webcrossing.
Webkosa is the public, open source edition of the popular Webcrossing server which has been used by thousands of sites for online communities, social networks and agile Web 2.0 object-oriented development. Webkosa includes its own integrated web server, email server, ftp server, out-of-the-box forums with discussions, users and authentication, post-by-email and numerous other user and community-oriented features to get you started with development, or use as is. Webkosa includes a... -
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tuda-rsync_install
install method for cluster compute nodes
Tuda-rsync_install is a initrd image containing scripts to partition and rsync a rootfs to compute, or other nodes. A fast, easy and flexible solution not only for HPC systems, although it has been developed for that purpose. -
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distmap
A toolkit for distributed short read mapping
DistMap is a user-friendly pipeline designed to map short reads in a MapReduce framework on a local Hadoop cluster. It is designed to be easily implemented by researchers who do not have expert knowledge of bioinformatics. As it does not have any dependencies, DistMap provides full flexibility and control to the user. The user can use any version of a compatible mapper and any reference genome assembly. There is no need to maintain the mapper, reference or DistMap source code on each of the slaves (nodes) in the Hadoop cluster, making maintenance extremely easy. -
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gossimon
Cluster Monitoring tool using gossip mechanisem
Gossip based distributed information monitoring system for a cluster of Linux nodes. The package includes a daemon to run on every node of the cluster and client programs for obtaining and displaying information about all nodes -
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Comparison of Energy Efficiency between a Desktop Grid System (BOINC) and a HPC Cluster System (Mogon) This is a thesis written at the Universität Paderborn, Germany -Gokul Krishnan
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CryptID
An open framework for Single SignOn authentication
CryptID an open framework that bridges Single SignOn (SSO) authentication with any standards compliant LDAP based authentication service. If you want to securely authenticate legacy services, such as smtp, pop3 or http against your Active Directory cluster or LDAP server, CryptID can provide secure access to SSO authentication without the messy HTTP bloat common to conventional SAML products. CryptID is designed to support synchronisation from multiple servers, and multiple organisations. -
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SprezzOS
SprezzOS -- Linux for the discerning power user.
SprezzOS Linux seeks to provide the premier experience for power users, HPC junkies, cluster administrators and anyone else for whom Debian Unstable is insufficiently hardcore. -
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An advanced ham radio logger based on Firebird database. Provides radio control based on hamlib libraries (currently support of 140+ radio types and models), DX cluster connection, QRZ callbook (web version), a grayliner, QSL manager database etc.
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Dress Up RNA seq
End-to-end automated pipeline of RNA seq packages for an HPC system
...RNA seq programs included are TopHat, CuffLinks, CuffDiff, CuffMerge, FastQC, and trimming using the FastX toolkit. DressUp facilitates RNA seq programs by streamlining various packages into a single script. That script executes the RNA seq programs on a batch cluster system. Upon execution of the script, jobs are submitted to the cluster depending on attributes set up in the configuration file. Program options can be modified in the main script "DressUp", and PBS options can be modified from the HeaderFiles directory. -
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Open ActiveWrl is a software development toolkit based on a generic software development approach that allows the implementation of parallel immersive VRML/X3D browsers on heterogenous cluster systems. It supports systems running Win NT/2000/XP and Linux
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CORECLUST
CORECLUST (COnservative REgulatory CLUster STructure)
CORECLUST uses an HMM-based technique to predict cis-regulatory modules (CRMs) given known motifs for a set of system-specific transcription factors (TFs). Given regulatory regions of orthologous and/or co-regulated genes, CORECLUST constructs a model describing conserved rules of relative location of TF binding sites (CRM structure). The constructed model may be used for the CRM prediction, as well as for the investigation of the regulatory grammar of the system of interest. -
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Jades
Java distributed executor service library
...Handling of access restrictions is left to the user (ie you can type your password every time or use authentication keys). Nodes can be added dynamically. When a node is added, workers are created according to the node's processor count. Eg, a cluster of 4 quadcores will give 16 workers. -
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SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint / restart capability for MPI codes.
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clupan is a tool for performing the cluster expansion and several Monte Carlo simulations in multicomponent alloys. clupan can be used for predicting ground state structures and evaluating phase diagrams on the basis of results of DFT calculations.
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SpiKeDeteKt
An automatic spike detection program to be used with new KlustaKwik
...The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs the following files: .fet.n (feature file) .mask.n (needed for using the new (masked) KlustaKwik) .clu.n (a trivial clue file where everything is put into a single cluster) .fmask.n (trial - float masks instead of binary, we are using this for testing masked KlustaKwik) .spk.n (spike file) .upsk.n (unfiltered spike waveform) .res.n (list of spike times) .xml (an xml file with all the parameters that can subsequently be used by neuroscope or klusters) .fil (highpass filtered data) .h5 (
