Search Results for "cluster" - Page 26
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Showing 938 open source projects for "cluster"
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TaskManager
TaskManager manages calculation jobs in a computer cluster environment
...However, he should use the TaskManager to submit calculation jobs to the cluster to avoid an overload of the hosts. Jobs which are under the control of the TaskManager are executed on a host of the computer cluster with the rights of the respective user to ensure that the executing jobs have the permission to access the user's files. -
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Arron-IMSA
Integrated Metagenomic Sequence Analysis for Next Gen Datasets
...IMSA then aligns the filtered reads to a user-defined universal database to characterize exogenous reads within the host background. IMSA assigns a score to each node of the taxonomy based on read frequency, and can output this as a taxonomy report suitable for cluster analysis or as a taxonomy map (TaxMap). IMSA also outputs the specific sequence reads assigned to a taxon of interest for downstream analysis. -
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Hierarchical cluster engine HCE
Hierarchical Cluster Engine project
The main idea of this project – to implement the solution that can be used to: construct custom network mesh or distributed network cluster structure with several relations types between nodes, formalize the data flow processing goes from upper node level central source point to down nodes and backward, formalize the management requests handling from multiple source points, support native reducing of multiple nodes results (aggregation, duplicates elimination, sorting and so on), internally support powerful full-text search engine and data storage, provide transactions-less and transactional requests processing, support flexible run-time changes of cluster infrastructure, have many languages bindings for client-side integration APIs in one product build on C++ language... ... -
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AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.
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RainforestCluster
Dynamically manage Amazon EC2 clusters
...It also provides pre-installed features such as GlusterFS distributed filesystems, ThunderstormDistributor queuing system, RAID 0 /scratch, password-less ssh, and automatic cluster management, for ease of use and maximum processing speed for computational tools. Originally it was developed as a different version for the Wall Lab at Harvard CBMI. -
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ThunderstormDistributor
Distribute jobs to compute nodes on dynamic clusters
ThunderstormDistributor is a queuing system that distributes jobs and computational workload across dynamic clusters in the cloud. It manages the assignment of jobs to maximize CPU and memory usage and prevent oversubscription of compute nodes. It also performs advanced statistics collection on individual compute nodes and jobs to graph the distribution of disk, network, CPU, and memory usage over time, which facilitates the advanced optimization and tuning of computational workflows. -
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HBase - Hannibal
Monitor and maintain HBase configured for manual splitting
Hannibal is a tool to help monitor and maintain HBase-Clusters that are configured for manual splitting. While HBase provides metrics to monitor overall cluster health via JMX or Ganglia, it lacks the ability to monitor single regions in an easy way. This information is essential when your cluster is configured for manual splits, especially when the data growth is not uniform. This tool tries to fill that gap by answering the following questions: How well are regions balanced over the cluster? ... -
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Cost-sensitive Classifiers
Adaboost extensions for cost-sentive classification
Adaboost extensions for cost-sentive classification CSExtension 1 CSExtension 2 CSExtension 3 CSExtension 4 CSExtension 5 AdaCost Boost CostBoost Uboost CostUBoost AdaBoostM1 Implementation of all the listed algorithms of the cluster "cost-sensitive classification". They are the meta algorithms which requires base algorithms e.g. Decision Tree Moreover, Voting criteria is also required e.g. Minimum expected cost criteria Input also requires to load an arff file and a cost matrix (sample arff and cost files are uploaded for users' reference) This extension uses weka for classification and generates the classification model along with confusion matrix. ... -
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Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
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Phoenix Cluster Project is an open cluster architecture. It is built using Gentoo Linux with RootFS shared between all nodes of the cluster. The main components are: Torque/Maui, Network Raid, Ganglia, LAMP Platform, KVM and GLSL for GPGPU.
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xenqtt
Java MQTT client API and applications
A library that includes a Java MQTT client API that can be used in both synchronous and asynchronous applications. The library also includes various MQTT applications including a proxy that allows a server cluster to be load balanced as a single MQTT client; an HTTP <-> MQTT gateway; a mock MQTT broker; etc -
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SchizoHit
cluster paired-end sequences
Like CD-HIT, but works with paired-end reads -
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Epik Utilities
Epik Utilities are tools for Linux Administrators.
Epikscan is a cluster aware, diagnostic script that runs basic health checks and gathers detailed, addressable system information from an RHEL, Scientific Linux, Oracle/OVM or CentOS 4, 5 or 6 system. A single archive is created for each host that contains the scan data along with linking information that can be merged with scans from other nodes to produce a cluster oriented report. -
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PBS Cluster Viz is a project to display information useful to admins and users about a computing cluster managed by a PBS-compatible resource manager. Information includes load and job distribution. Interactive as well as static output is available.
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Procedural Graphics Workbench
Interactive desktop application for rendering various fractals.
...Some most important planned features: * deep zooming capability (similar to Fractint) * multithreaded rendering * rendering divided to various machines ("rendering cluster") * various coloring modes * blending and filtering (based on a common graph, not on simple layers) * central database for storing and retrieving rendering parameters -
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A Java servlet filter which moves session storage out of the java application container, allowing to scale easily by adding more servers, without using a cluster nor changing the code. Session data can be stored into a cookie, memcached, a DB ...
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Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.
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JUMMP
JUMMP: Job Uninterrupted Maneuverable MapReduce Platform
...Use of this project for research requires citation of our paper. W.C. Moody; L. Ngo; E. Duffy; A. Apon; "JUMMP: Job Uninterrupted Maneuverable MapReduce Platform", Cluster Computing (CLUSTER), 2013 IEEE International Conference on , 23-27 Sept. 2013 -
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Cake
A bioinformatic tools for somatic mutation discovery
Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or used as a stand-alone application For additional information on how to obtain and run Cake, updates and known issues please visit the wiki page https://sourceforge.net/p/cakesomatic/wiki/Cake%20Somatic/ -
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LAMPRAD
Rapid Application Development for LAMP Servers
The goal of LAMPRAD is to provide Cluster-able Rapid Application Development for LAMP Servers, or more specifically Rapid Application Development for PHP and MySQL. At the core of the design only 3 LAMPRAD PHP files are loaded onto the web server, these should be nearly set and forget. All application files are stored in a MySQL table (with version history). This design allows rapid deployment of additional web and MySQL servers, all this transparent to your application. -
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Kepler Monitoring
Kepler is a monitoring system for HPC clusters
Kepler is a monitoring system for HPC clusters : it allows users to monitor cluster elements like nodes, network devices and storage nodes. Analyse can be centered on jobs to determine performances and behaviours. -
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Crawlzilla is a cluster-based search engine deployment tools. It helps user to build search engine in your cluster, and offers management mechanism (such as: cluster management, crawl management, index pool management...).
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RIO
Regularity Inspector for Ontologies
RIO is an open source project. It is a framework that uses cluster analysis for the detection of syntactic regularities in ontologies. The implementation of RIO is based on OWLAPI (http://owlapi.sourceforge.net). A standalone Java tool is used for computing regularities, which are then saved in an XML file. The RIO plugin for Protege 4 (http://protege.stanford.edu) can be used for loading and visualising the regularities in Protege ontology editor. -
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ClusterGen
Linux Cluster traffic generator
ClusterGen is a traffic generator which uses pktgen Linux kernel module for packet generation. To reach high intensity of traffic, ClusterGen uses set of hosts that generate traffic at the same time. Project was initially written and being developed by MERA http://www.merasws.com/ -
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Comparison of Cartesian Treecodes
Fortran code to compare particle-cluster and cluster-particle treecode
...Direct summation is prohibitively expensive when M and N are large. We provide Fortran 90 code for two complementary treecode methods which reduce the cost. The standard particle-cluster treecode partitions the sources into an octree and applies a far-field approximation, while a recently developed cluster-particle treecode instead partitions the targets into an octree and applies a near-field approximation. Particle-cluster is faster when N >> M, and cluster-particle is faster when M >> N. Reference: Boateng, H. ...
