Search Results for "cluster" - Page 23
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Showing 938 open source projects for "cluster"
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Switchboard
A feature flipper library for Pyramid and Pylons apps.
...Originally used to selectively roll out changes to the SourceForge site, the library lets you easily control whether a particular change (a switch) is active. You can make switches active for a certain percentage of visitors, all visitors to a particular host in a cluster, or if a particular string is present in the query string. Furthermore you can easily create your own conditions to do fancier things like geo-targeting, specific users, etc. In short, Switchboard turns you into a continuous deployment ninja. -
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MT-Toolbox
Software for molecule tagged DNA sequences
MT-Toolbox is a user friendly software package for analysis of molecule tagged Illumina MiSeq reads. Molecule tagging is a molecular biology technique to significantly reduce amplicon sequence error and PCR bias which can be applied to any amplicon sequencing project. MT-Toolbox converts raw reads into high quality consensus sequences based on each reads molecule tag. For details and other important information please refer to the MT-Toolbox webpage below. MT-Toolbox is now hosted on... -
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Moscrack is a perl application designed to facilitate cracking WPA keys on a cluster of computers. This is accomplished with any one of Mosix clustering software, ssh, rsh or Pyrit connectivity to nodes. Cluster nodes can run any Un*x variant (includ
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Summingbird
Streaming MapReduce with Scalding and Storm
Summingbird is a streaming + batch hybrid computation framework developed by Twitter. Its aim is to let developers express data aggregation pipelines in a unified way, where the same logic can run either in real time (stream) or in batch mode, and the results can be merged or reconciled. In effect, Summingbird abstracts over multiple execution engines (such as Storm, Scalding, etc.) to provide one high-level program that composes transformations and aggregations, and then executes them in... -
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Mesos Cluster
Scripts to configure a Mesos cluster using Mesos and Mesosphere
Scripts to configure a Mesos cluster using Mesos and Mesosphere services. Mesos master running the Marathon and Chronos frameworks. Mesos agent with Docker containerizer. Mesos DNS for core service discovery. Marathon load balancer using HAProxy for SSL and proxying to internal applications. To try it out locally use the Vagrant configuration. To use the scripts to build a custom Mesos cluster first install the roles in your project and configure Ansible to load roles from the roles directory provided by this project. ... -
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Spark Python Notebooks
Apache Spark & Python (pySpark) tutorials for Big Data Analysis
Spark Python Notebooks is a curated collection of example Jupyter notebooks designed to help developers and data engineers learn Apache Spark using Python in an interactive environment. Rather than only providing static code files, this project uses notebooks to teach practical data processing workflows, exposing users to real Spark programming patterns like working with RDDs, DataFrames, and distributed computations. These notebooks often demonstrate how to transform, analyze, and visualize... -
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xCAT
An extreme cluster/cloud administration toolkit
Extreme Cluster Administration Toolkit. xCAT is a scalable cluster management and provisioning tool that provides hardware control, discovery, and OS diskful/diskfree deployment. More info and daily/weekly snapshots can be found at http://xcat.sf.net/ -
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Community Detection Modularity Suite
Suite of community detection algorithms based on Modularity
- MixtureModel_v1r1: overlapping community algorithm [3], which includes novel partition density and fuzzy modularity metrics. - OpenMP versions of algorithms in [1] are available to download. - Main suite containing three community detection algorithms based on the Modularity measure containing: Geodesic and Random Walk edge Betweenness [1] and Spectral Modularity [2]. Collaborator: Theologos Kotsos. [1] M. Newman & M. Girvan, Physical Review, E 69 (026113), 2004. [2] M.... -
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Viesa
Enable to extract and visualize patterns from annotated arrays
This software enables to extract and visualize regularities (i.e., patterns) from a set of two-dimensional annotated arrays. An annotated array is a two-dimensional data structure in which the order of the line is important (it usually represents the temporality) whereas the order of the columns is irrelevant. For instance, the data produced by a smartphone could be represented as an annotated array : - each column corresponds to one sensor (so the columns order is irrelevant) ; -... -
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elasticsearch-osmosis-plugin
An Osmosis plugin that index OpenStreetMap data into elasticsearch
elasticsearch-osmosis-plugin is an Osmosis plugin that index OpenStreetMap data into an elasticsearch cluster. -
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Unity Cluster Package
Dragging and Dropping Components for Multi-projection Applications
This component set for the Unity game engine facilitates the development of immersive and interactive multi-projection applications. The drag-and-drop components allow Unity applications to run on a commodity PC cluster with passive support for stereoscopy, perspective correction according to the user's viewpoint and access to special servers to provide device-independent features. Cite us. Please check the package main paper (1), the survey used as base (2), and some multiprojection applications built with this custom Unity package (3). (1) http://link.springer.com/chapter/10.1007/978-3-319-21413-9_19 [best paper award] (2) http://ieeexplore.ieee.org/xpls/abs_all.jsp?... -
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2d Heat advection Parallelized
MPI based Parallelized C Program code to solve for 2D heat advection.
Type - 2D Grid - Structured Cartesian Case - Heat advection Method - Finite Volume Method Approach - Flux based Accuracy - First order Scheme - Explicit, QUICK Temporal - Unsteady Parallelized - MPI (for cluster environment) Inputs: [ Length of domain (LX,LY) Time step - DT Material properties - Conductivity (k or kk) Density - (rho) Heat capacity - (cp) Boundary condition and Initial condition. ] Setup: The left and top edges are heated to 100 C and the right and bottom boundaries are heated to 0 C. The flow is along the main diagonal. -
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goSTAG
Gene Ontology Subtrees to Tag and Annotate Genes within a set
...Given gene lists, goSTAG performs GO enrichment analysis and clusters the GO terms based on the p-values from the significance tests. GO subtrees are constructed for each cluster, and the term that has the most paths to the root within the subtree is used to tag and annotate the cluster. -
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Tomcat for Large Scale Deployments
Use one Apache Tomcat installation to run multiple Tomcat instances
...because you already have many tomcats and you don't want to migrate them one by one anymore because your company doesn't want to pay for a TCServer or a TCat server for the moment Features : run multiple tomcat instances with only one runtime easy migration (just upgrade the tomcat folder) JVM monitoring based on Java Service Wrapper psi-probe embedded automatic port allocation Roadmap : global overview of the cluster automatic node detection easy deployment of -
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CCKDM
Concern Mining
This is a tool for concern mining which uses a KDM model as input and the output is the same model with annotated concerns. It uses a Concern Library and a modified String Clustering K-means algorithm with Levenshtein metric to cluster the strings. -
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PGAP
PGAP is a pipeline for pan-genome analysis.
PGAP is a pan-genomes analysis pipeline developed with Perl. It could perform five analytic functions with only one command, including cluster analysis of functional genes, pan-genome profile analysis, genetic variation analysis of functional genes, species evolution analysis and function enrichment analysis of gene clusters. -
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de novo assembly validation
de novo clustering of assembled contigs into two groups
This project deals with de novo assembled contigs to cluster them into two groups forming the lengthwise clusters. These two groups are correctly assembled contigs and wrongly assembled contigs. For non-model organisms, without reference genome, it is very hard to state that which contig is correct and which is not. With this project, the proposed unsupervised clustering method (K-means) based clustering is done utilizing the depth of reads mapping based coverage information. -
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2. Tune kernel Ridge MM (HPC parallel)
Shell/R program which tunes kernel Ridge by parallel computing
A shell/R program for HPC Linux clusters which allows users to estimate the optimal rate of decay parameter for kernel Ridge regression, within the mixed model framework, for prediction. The optimal rate of decay is estimated using K-folds cross validation parallelized using cluster nodes. -
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MIREX (MapReduce Information Retrieval Experiments) provides solutions to easily and quickly run large-scale information retrieval experiments on a cluster of machines using Hadoop. Version 0.3 has tools for the TREC ClueWeb09 and ClueWeb12 collections.
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Baalue Environment
Bananapi Cluster (DEPRECATED -> see A20_SDK)
Bananapi Cluster (see https://github.com/tjohann/a20_sdk for cross-toolchain) (DEPRECATED -> see A20_SDK) -
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(NCS) NEQUIM Contact System
Tool for analyze of interactions in ligand-protein complexes
NEQUIM Contact System (NCS) is a system to generate and analyze interaction vectors of protein-ligand complexes. Core features include multiple views of vectors, multiple selection options, cluster analysis and generation of interaction vector model. The input could be from PDB format or from files generated by automatic docking softwares AutoDock/Vina or Surflex. -
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ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer. Please notice, the public development has moved to github: https://github.com/ParaStation
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libQtCassandra
C++ library for Apache Cassandra with Qt Framework
C++ wrapper library for the Apache Cassandra distributed database system using Qt as the basic framework. Offers C++ array like syntax to quickly read and write in the database. Well thought and fast object oriented library(i.e. caching.) -
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This software searches the potential energy surface of small to medium size atomic systems for global minima using quantum ab initio techniques. It performs bond rotations and molecule translations and rotations on a Linux cluster with MPI.
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Hadoop configuration files
Hadoop configuration files
Hadoop 1.x and 2.x configuration files and some other files to configure Hadoop cluster
